Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PG908_RS03460 Genome accession   NZ_CP115957
Coordinates   715992..716360 (+) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain PSS4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710992..721360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG908_RS03435 - 711480..712106 (-) 627 WP_016723449.1 LemA family protein -
  PG908_RS03440 dapA 712490..713404 (+) 915 WP_011000622.1 4-hydroxy-tetrahydrodipicolinate synthase -
  PG908_RS03445 hemL 713507..714808 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  PG908_RS03450 - 715020..715202 (+) 183 WP_003261842.1 rubredoxin -
  PG908_RS03455 pilG 715493..715960 (+) 468 WP_016723446.1 response regulator Regulator
  PG908_RS03460 pilH 715992..716360 (+) 369 WP_003269243.1 response regulator Machinery gene
  PG908_RS03465 - 716419..716964 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  PG908_RS03470 - 717210..719441 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=706398 PG908_RS03460 WP_003269243.1 715992..716360(+) (pilH) [Ralstonia pseudosolanacearum strain PSS4]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=706398 PG908_RS03460 WP_003269243.1 715992..716360(+) (pilH) [Ralstonia pseudosolanacearum strain PSS4]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434