Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7677_RS03195 Genome accession   NZ_AP023391
Coordinates   639314..639910 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 634314..644910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS03170 (DAT299_05730) - 634633..635166 (+) 534 WP_232088998.1 ATP-binding cassette domain-containing protein -
  H7677_RS03175 - 635142..636010 (+) 869 Protein_580 MobA/MobL family protein -
  H7677_RS03180 (DAT299_05760) - 636087..636728 (+) 642 WP_029749608.1 hypothetical protein -
  H7677_RS03185 (DAT299_05770) - 636962..637138 (+) 177 WP_415669135.1 hypothetical protein -
  H7677_RS03190 (DAT299_05780) pbp2b 637230..639305 (+) 2076 WP_184494093.1 penicillin-binding protein PBP2B -
  H7677_RS03195 (DAT299_05790) recR 639314..639910 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  H7677_RS03200 (DAT299_05800) - 640015..641061 (+) 1047 WP_184494095.1 D-alanine--D-alanine ligase -
  H7677_RS03205 (DAT299_05810) - 641149..641529 (+) 381 WP_184494097.1 OsmC family protein -
  H7677_RS03210 (DAT299_05820) - 641653..643014 (+) 1362 WP_184494099.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  H7677_RS03215 - 643105..643803 (+) 699 WP_023369706.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=70639 H7677_RS03195 WP_002935848.1 639314..639910(+) (recR) [Streptococcus suis strain DAT299]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=70639 H7677_RS03195 WP_002935848.1 639314..639910(+) (recR) [Streptococcus suis strain DAT299]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCTATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment