Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PG907_RS14190 Genome accession   NZ_CP115955
Coordinates   3003166..3005358 (-) Length   730 a.a.
NCBI ID   WP_193027625.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2998166..3010358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS14160 - 2998365..2999588 (+) 1224 WP_193027628.1 diaminopropionate ammonia-lyase -
  PG907_RS14165 - 2999741..3000679 (-) 939 WP_275760343.1 LysR family transcriptional regulator -
  PG907_RS14170 - 3000822..3001952 (+) 1131 WP_193027626.1 DSD1 family PLP-dependent enzyme -
  PG907_RS14175 - 3002096..3002269 (+) 174 WP_020747574.1 hypothetical protein -
  PG907_RS14180 - 3002493..3002933 (+) 441 WP_020747573.1 hypothetical protein -
  PG907_RS14185 - 3002945..3003169 (+) 225 WP_230643340.1 GDCCVxC domain-containing (seleno)protein -
  PG907_RS14190 recG 3003166..3005358 (-) 2193 WP_193027625.1 ATP-dependent DNA helicase RecG Machinery gene
  PG907_RS14195 queA 3005435..3006523 (+) 1089 WP_020747570.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PG907_RS14200 tgt 3006517..3007668 (+) 1152 WP_020747569.1 tRNA guanosine(34) transglycosylase Tgt -
  PG907_RS14205 yajC 3007780..3008109 (+) 330 WP_193028431.1 preprotein translocase subunit YajC -
  PG907_RS14210 secD 3008231..3010111 (+) 1881 WP_193027624.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79100.13 Da        Isoelectric Point: 9.4756

>NTDB_id=706362 PG907_RS14190 WP_193027625.1 3003166..3005358(-) (recG) [Ralstonia pseudosolanacearum strain RUN2340]
MPARARSATAAVPAPDTDAAPAAGPRRARAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVAPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLHGPLASLKLMAPAEAVRLLHQPTPDVDEYS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFVAALPFKLTGAQARVWEEISADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTGTPIAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=706362 PG907_RS14190 WP_193027625.1 3003166..3005358(-) (recG) [Ralstonia pseudosolanacearum strain RUN2340]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATACCGACGCGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCGCGCGGCAAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTACGAGGACGAAACCGCGCTGCTGACCATCGCCGAAGCCGTC
GCCCGCGCCAATACTGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCGCGCCGGCA
GCTGGTAGTGCATATCGCCGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAATTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGCGCGCGCCTGCGCGTGCGCGGTGAGGTGCGCGGCGGTTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGGCGCCGGATGAGCCGCTGCCCGACCGTCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAACGCGCTCGGTCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCACGGGCCGC
TGGCGTCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGCTGCACCAGCCCACGCCCGACGTGGACGAGTACAGC
CTGGTCGAGCGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAGCTCTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGATTGCTCGCGCGCTTCGTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCAGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCTGGCAGTCTCAAGCGCAAGCAGAAGGACGAGGCCGCCGCGCGCGTGGCCGCCGGC
ACCGCGCAGCTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
TGAGCAGCATCGCTTTGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGGCACGCCCATCGCCGAGA
CCGCGCAGTTGGTGCCGCACCAGCTGATGATGTCGGCCACACCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCCCCTGATTGAAGAAAGCG
AGGCGCTGCAGCTGCAGACCGCGGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGGCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCTCCCCTGTCG
CCGACGGCCAAGCAGCGCCTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGACATCCG
CGGCCCCGGCGAATTTCTCGGCGCGCGGCAATCGGGCGAGGCCATGCTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGATGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)

RecG wedge domain (RecG_wedge)

(47-194)

DEAD/DEAH box helicase (DEAD)

(303-471)

Helicase conserved C-terminal domain (Helicase_C)

(515-625)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

57.994

94.247

0.547
  recG/mmsA Streptococcus pneumoniae R6

41.504

91.096

0.378
  recG/mmsA Streptococcus pneumoniae R36A

41.504

91.096

0.378