Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PG907_RS09895 Genome accession   NZ_CP115955
Coordinates   2126336..2126959 (-) Length   207 a.a.
NCBI ID   WP_408005011.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2121336..2131959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS09875 - 2121425..2122474 (-) 1050 WP_016722154.1 ABC transporter substrate-binding protein -
  PG907_RS09880 - 2122569..2123777 (-) 1209 WP_193025924.1 CaiB/BaiF CoA transferase family protein -
  PG907_RS09885 - 2123810..2124730 (-) 921 WP_193025925.1 LysR family transcriptional regulator -
  PG907_RS09890 - 2124893..2126314 (+) 1422 WP_193025926.1 carbohydrate porin -
  PG907_RS09895 recR 2126336..2126959 (-) 624 WP_408005011.1 recombination mediator RecR Machinery gene
  PG907_RS09900 - 2127066..2127413 (-) 348 WP_011001142.1 YbaB/EbfC family nucleoid-associated protein -
  PG907_RS09905 - 2127510..2129711 (-) 2202 WP_193034758.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22493.89 Da        Isoelectric Point: 6.2270

>NTDB_id=706348 PG907_RS09895 WP_408005011.1 2126336..2126959(-) (recR) [Ralstonia pseudosolanacearum strain RUN2340]
MMRGGPGTPSALQMLIEALRVLPGVGPKSAQRMAYHLLQHDREGASRLAEALAEAAESIHHCSRCNTFTEQDVCETCLDP
RRDAAVLCVVETPADQMMIEQTLTYRGQYFVLMGRLSPLDNIGPKEIHLERLLARATDPALGGPCAEVILATNFTSEGEA
TAHYIGEMLKARGIKVSRLARGVPVGGELEYVDAGTIARAVLDRRQL

Nucleotide


Download         Length: 624 bp        

>NTDB_id=706348 PG907_RS09895 WP_408005011.1 2126336..2126959(-) (recR) [Ralstonia pseudosolanacearum strain RUN2340]
ATGATGCGCGGCGGTCCGGGCACGCCATCGGCGCTGCAGATGCTGATCGAGGCCTTGCGCGTGCTGCCGGGCGTGGGGCC
GAAGTCTGCGCAGCGCATGGCCTATCACCTGCTGCAGCATGACCGCGAAGGCGCGTCGCGGCTGGCCGAAGCGCTGGCCG
AGGCGGCCGAGTCGATCCACCATTGCAGCCGCTGCAACACCTTCACCGAGCAGGATGTCTGCGAGACCTGCCTGGACCCG
CGCCGCGACGCCGCGGTGCTGTGCGTGGTGGAAACGCCCGCCGACCAGATGATGATCGAGCAGACGCTGACCTATCGCGG
CCAGTATTTCGTGCTGATGGGGCGGCTCTCGCCGCTGGACAACATCGGCCCCAAGGAAATCCACCTCGAGCGCCTGCTGG
CCCGGGCGACCGATCCGGCGCTGGGCGGGCCGTGCGCCGAAGTCATTCTCGCCACCAACTTCACCAGCGAGGGCGAGGCC
ACCGCGCACTACATCGGCGAGATGCTCAAGGCGCGCGGCATCAAGGTGTCGCGGCTGGCGCGCGGTGTGCCGGTGGGCGG
CGAGCTGGAATACGTGGACGCGGGCACCATCGCCCGCGCGGTGCTGGACCGGCGCCAGCTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(86-180)

RecR protein (RecR_ZnF)

(45-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.734

96.135

0.449
  recR Bacillus subtilis subsp. subtilis str. 168

45.729

96.135

0.44
  recR Streptococcus pneumoniae R6

38.693

96.135

0.372