Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PG907_RS07140 Genome accession   NZ_CP115955
Coordinates   1497443..1498276 (-) Length   277 a.a.
NCBI ID   WP_193025372.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492443..1503276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS07120 - 1493801..1494580 (+) 780 WP_193036584.1 hypothetical protein -
  PG907_RS07125 - 1494620..1494823 (+) 204 WP_193025368.1 DUF465 domain-containing protein -
  PG907_RS07130 - 1494903..1497044 (+) 2142 WP_275760817.1 ATP-dependent DNA helicase -
  PG907_RS07135 - 1497135..1497317 (+) 183 WP_193036588.1 transposase domain-containing protein -
  PG907_RS07140 comL 1497443..1498276 (-) 834 WP_193025372.1 outer membrane protein assembly factor BamD Machinery gene
  PG907_RS07145 - 1498292..1499404 (+) 1113 WP_197365202.1 RluA family pseudouridine synthase -
  PG907_RS07150 pgeF 1499388..1500191 (+) 804 WP_275760818.1 peptidoglycan editing factor PgeF -
  PG907_RS07155 - 1500240..1500467 (-) 228 WP_193036594.1 hypothetical protein -
  PG907_RS07160 phaC 1500751..1502547 (+) 1797 WP_197365204.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31485.52 Da        Isoelectric Point: 8.2915

>NTDB_id=706337 PG907_RS07140 WP_193025372.1 1497443..1498276(-) (comL) [Ralstonia pseudosolanacearum strain RUN2340]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLLARFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPNSDYLLYGQRKKDKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=706337 PG907_RS07140 WP_193025372.1 1497443..1498276(-) (comL) [Ralstonia pseudosolanacearum strain RUN2340]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCGGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAAAGCCGCTACCCGTTCGGGCCA
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAACTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGTTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAACTTCAACGACA
ACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAACGCGATCCGAAGGCAGCCCGCGCCGCCTACGATGCG
TTCAAGACACTGCTCGCGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCTGCCCGCTACTACTACCGCCGCGGCGCCTACCTGGCCGCCACCAACCGCGCACAGG
AAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTGGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAACAGCGACTACCTTCTGTACGGACAGCG
CAAGAAGGACAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.348

95.307

0.451
  comL Neisseria gonorrhoeae MS11

45.833

95.307

0.437