Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PG907_RS01650 Genome accession   NZ_CP115955
Coordinates   365480..366112 (-) Length   210 a.a.
NCBI ID   WP_020749875.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 360480..371112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS01625 - 362113..362250 (+) 138 WP_193026664.1 hypothetical protein -
  PG907_RS01630 - 362283..362600 (+) 318 WP_011000255.1 DUF1840 domain-containing protein -
  PG907_RS01635 - 363227..364651 (+) 1425 WP_193026663.1 CHASE3 domain-containing protein -
  PG907_RS01640 - 364714..364854 (-) 141 WP_003264564.1 entericidin A/B family lipoprotein -
  PG907_RS01645 - 364925..365365 (-) 441 WP_193026662.1 response regulator -
  PG907_RS01650 letA 365480..366112 (-) 633 WP_020749875.1 response regulator transcription factor Regulator
  PG907_RS01655 - 366429..366833 (-) 405 WP_275760580.1 hypothetical protein -
  PG907_RS01660 metH 367079..369796 (-) 2718 WP_275760581.1 methionine synthase -
  PG907_RS01665 - 369865..370905 (-) 1041 WP_275760582.1 homocysteine S-methyltransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23461.99 Da        Isoelectric Point: 5.3986

>NTDB_id=706319 PG907_RS01650 WP_020749875.1 365480..366112(-) (letA) [Ralstonia pseudosolanacearum strain RUN2340]
MIRVLIADDHEIVRAGLRQFLSDERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRNGIDTLKLVRQRHPDLPVLI
LSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQTLSKREFQIFCKL
ARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLVE

Nucleotide


Download         Length: 633 bp        

>NTDB_id=706319 PG907_RS01650 WP_020749875.1 365480..366112(-) (letA) [Ralstonia pseudosolanacearum strain RUN2340]
ATGATTCGCGTCCTGATTGCGGACGACCATGAAATCGTCCGCGCCGGTCTTCGGCAGTTCCTGTCGGATGAGCGGGACAT
CGAAGTGGCGGGGGAGGCTGCCAGCGGGGAAGAGGTGATGGAGCAACTCCGCACCGGAACCTTCGACGTGGTGGTCCTGG
ACATCTCCATGCCCGACCGCAACGGCATCGACACGCTCAAGCTGGTACGGCAGCGTCACCCGGACCTGCCGGTGCTGATC
CTGTCCACCTTTCCGGAAGACCAGTACGCGATCAATCTGATCCGGGCCGGCGCCTCGGGCTACCTGACCAAGGAAAGCGC
ACCGGACGAACTCGTCAAGGCCATCCGCACCGTCTCGCAAGGGCGCCGTTACGTGAGCCCGACGGTCGCCGAACTGCTGA
TCGGCGGGCTGGAGAAGCCGACCGACCAGCCGCTGCACCAGACCCTGTCCAAGCGCGAATTCCAGATCTTCTGCAAGCTG
GCGCGTGGCCAGTCGGTCTCGATCATCGCCGAAGAACTGTTCCTGAGCGTCAAGACGGTCAGCACGTACCGCACCCGCAT
CCTGGAAAAGATGGGCATGAAGTCGAACGCCGACCTGACGTATTACGCCATCAAGAACGGACTGGTGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.336

100

0.395
  letA Legionella pneumophila strain ERS1305867

39.336

100

0.395