Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6L41_RS12705 Genome accession   NZ_CP115924
Coordinates   2612378..2612983 (-) Length   201 a.a.
NCBI ID   WP_003514308.1    Uniprot ID   A0A1V2AN75
Organism   Agrobacterium tumefaciens strain K224     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2607378..2617983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L41_RS12690 (G6L41_012690) rimP 2608414..2609010 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  G6L41_RS12695 (G6L41_012695) - 2609298..2610926 (+) 1629 WP_076843882.1 MFS transporter -
  G6L41_RS12700 (G6L41_012700) - 2611016..2612254 (-) 1239 WP_410171810.1 lytic murein transglycosylase -
  G6L41_RS12705 (G6L41_012705) recR 2612378..2612983 (-) 606 WP_003514308.1 recombination mediator RecR Machinery gene
  G6L41_RS12710 (G6L41_012710) - 2613021..2613656 (+) 636 WP_173992239.1 MOSC domain-containing protein -
  G6L41_RS12715 (G6L41_012715) - 2613670..2613993 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  G6L41_RS12720 (G6L41_012720) - 2614021..2615898 (-) 1878 WP_173992240.1 DNA polymerase III subunit gamma/tau -
  G6L41_RS12730 (G6L41_012730) - 2616223..2616651 (+) 429 WP_161986907.1 HIT domain-containing protein -
  G6L41_RS12735 (G6L41_012735) nudC 2616651..2617613 (+) 963 WP_003514323.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21367.72 Da        Isoelectric Point: 6.3321

>NTDB_id=706316 G6L41_RS12705 WP_003514308.1 2612378..2612983(-) (recR) [Agrobacterium tumefaciens strain K224]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=706316 G6L41_RS12705 WP_003514308.1 2612378..2612983(-) (recR) [Agrobacterium tumefaciens strain K224]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTACCGGGGCTTGGGCCTCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTAGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCCATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTATATCACC
GACCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
TGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2AN75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373