Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NLW79_RS13525 Genome accession   NZ_CP100651
Coordinates   2614971..2616041 (-) Length   356 a.a.
NCBI ID   WP_095713275.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2609971..2621041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS13480 (NLW79_13480) tapA 2610445..2611206 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  NLW79_RS13485 (NLW79_13485) - 2611484..2611807 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  NLW79_RS13490 (NLW79_13490) - 2611850..2612029 (-) 180 WP_003236949.1 YqzE family protein -
  NLW79_RS13495 (NLW79_13495) comGG 2612101..2612475 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  NLW79_RS13500 (NLW79_13500) comGF 2612476..2612859 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  NLW79_RS13505 (NLW79_13505) comGE 2612885..2613232 (-) 348 WP_254517746.1 competence type IV pilus minor pilin ComGE Machinery gene
  NLW79_RS13510 (NLW79_13510) comGD 2613216..2613647 (-) 432 WP_044154579.1 competence type IV pilus minor pilin ComGD Machinery gene
  NLW79_RS13515 (NLW79_13515) comGC 2613637..2613933 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  NLW79_RS13520 (NLW79_13520) comGB 2613947..2614984 (-) 1038 WP_127696769.1 competence type IV pilus assembly protein ComGB Machinery gene
  NLW79_RS13525 (NLW79_13525) comGA 2614971..2616041 (-) 1071 WP_095713275.1 competence protein ComGA Machinery gene
  NLW79_RS13530 (NLW79_13530) - 2616362..2616772 (-) 411 WP_254517748.1 CBS domain-containing protein -
  NLW79_RS13535 (NLW79_13535) - 2616835..2617788 (-) 954 WP_095713277.1 magnesium transporter CorA family protein -
  NLW79_RS13540 (NLW79_13540) - 2617932..2619261 (+) 1330 Protein_2629 hemolysin family protein -
  NLW79_RS13545 (NLW79_13545) - 2619341..2620180 (-) 840 WP_127696766.1 STAS domain-containing protein -
  NLW79_RS13555 (NLW79_13555) mgsR 2620413..2620793 (-) 381 WP_026014741.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40480.69 Da        Isoelectric Point: 8.8394

>NTDB_id=706017 NLW79_RS13525 WP_095713275.1 2614971..2616041(-) (comGA) [Bacillus halotolerans strain MEC_B334]
MDSIEKISKTLIEEAYRTKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCEDGCSSVYCRLSRNVRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=706017 NLW79_RS13525 WP_095713275.1 2614971..2616041(-) (comGA) [Bacillus halotolerans strain MEC_B334]
TTGGATTCGATAGAAAAAATAAGCAAAACTTTAATTGAAGAGGCATATAGGACGAAGGCCTCTGACATTCACATTGTGCC
GAGGGAACGGGACGCAATCATTCATTTTCGGGTTGACCATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGACTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATAGGGGAAAGAAGAAAGCCGCAAAATGGATCTCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCAAAGACAGGAGCCACCTTGCTATCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACATTATATTCTCTGATCCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAAGTGCA
GGTGAATGAAAAAGCCGGTGTCACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATCTTAG
GTGAGATTAGAGACGCTGAAACAGCCCAAATTGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTTTTGTGAAGACGGATGTTCATCAGTGTATTGCCGCCTGTCAC
GAAATGTCAGGAGAGCAAGCGTATACGAGCTGCTTTACGGGAAAAACCTTCAGCAGTGTATCCAGGAAGCGAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.067

100

0.961