Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NLW79_RS01985 Genome accession   NZ_CP100651
Coordinates   373601..374038 (-) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 368601..379038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS01955 (NLW79_01955) - 368734..369870 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  NLW79_RS01960 (NLW79_01960) - 369913..370338 (+) 426 WP_198098571.1 RDD family protein -
  NLW79_RS01965 (NLW79_01965) - 370420..370755 (+) 336 WP_101863959.1 YckD family protein -
  NLW79_RS01970 (NLW79_01970) - 370907..371635 (+) 729 WP_106021062.1 AAA family ATPase -
  NLW79_RS01975 (NLW79_01975) - 371708..373141 (+) 1434 WP_101860166.1 glycoside hydrolase family 1 protein -
  NLW79_RS01980 (NLW79_01980) nin/comJ 373176..373574 (-) 399 WP_188323519.1 competence protein ComJ Regulator
  NLW79_RS01985 (NLW79_01985) nucA/comI 373601..374038 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  NLW79_RS01990 (NLW79_01990) tlpC 374236..375948 (-) 1713 WP_254518031.1 methyl-accepting chemotaxis protein TlpC -
  NLW79_RS01995 (NLW79_01995) hxlB 376061..376618 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  NLW79_RS02000 (NLW79_02000) hxlA 376624..377256 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  NLW79_RS02005 (NLW79_02005) hxlR 377488..377850 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=705975 NLW79_RS01985 WP_024120178.1 373601..374038(-) (nucA/comI) [Bacillus halotolerans strain MEC_B334]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=705975 NLW79_RS01985 WP_024120178.1 373601..374038(-) (nucA/comI) [Bacillus halotolerans strain MEC_B334]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTACCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917