Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NLW79_RS01980 Genome accession   NZ_CP100651
Coordinates   373176..373574 (-) Length   132 a.a.
NCBI ID   WP_188323519.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B334     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 368176..378574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS01955 (NLW79_01955) - 368734..369870 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  NLW79_RS01960 (NLW79_01960) - 369913..370338 (+) 426 WP_198098571.1 RDD family protein -
  NLW79_RS01965 (NLW79_01965) - 370420..370755 (+) 336 WP_101863959.1 YckD family protein -
  NLW79_RS01970 (NLW79_01970) - 370907..371635 (+) 729 WP_106021062.1 AAA family ATPase -
  NLW79_RS01975 (NLW79_01975) - 371708..373141 (+) 1434 WP_101860166.1 glycoside hydrolase family 1 protein -
  NLW79_RS01980 (NLW79_01980) nin/comJ 373176..373574 (-) 399 WP_188323519.1 competence protein ComJ Regulator
  NLW79_RS01985 (NLW79_01985) nucA/comI 373601..374038 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  NLW79_RS01990 (NLW79_01990) tlpC 374236..375948 (-) 1713 WP_254518031.1 methyl-accepting chemotaxis protein TlpC -
  NLW79_RS01995 (NLW79_01995) hxlB 376061..376618 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  NLW79_RS02000 (NLW79_02000) hxlA 376624..377256 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  NLW79_RS02005 (NLW79_02005) hxlR 377488..377850 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14972.93 Da        Isoelectric Point: 4.6250

>NTDB_id=705974 NLW79_RS01980 WP_188323519.1 373176..373574(-) (nin/comJ) [Bacillus halotolerans strain MEC_B334]
MIKSWKPQELTISYHQFTVFQKGSAPPVIDWTDEAIEKGYAEADEAISFEAQRNSKVYILLRLNSSETVASYEKKVTVPF
HVTKDGIEIESIMSKRLSFDLPKGDYQFTCYTVPAELSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=705974 NLW79_RS01980 WP_188323519.1 373176..373574(-) (nin/comJ) [Bacillus halotolerans strain MEC_B334]
TTGATCAAATCATGGAAGCCGCAAGAACTGACGATTTCATATCATCAATTTACTGTATTTCAAAAGGGTTCCGCACCGCC
AGTCATCGATTGGACAGATGAAGCAATTGAAAAAGGATATGCGGAAGCGGACGAAGCCATTTCGTTTGAGGCACAGCGAA
ATTCAAAGGTATATATTCTTTTGCGACTTAACAGTTCAGAAACAGTTGCATCCTACGAAAAAAAAGTGACTGTTCCTTTT
CACGTCACAAAAGACGGAATTGAAATTGAAAGCATCATGTCCAAGAGGCTGTCCTTTGACCTTCCTAAAGGAGACTATCA
ATTCACATGCTACACTGTGCCGGCTGAGCTGTCAGATCTGCACGCTGACACTTATATCATTGATGCTGTTTCCGTATAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

87.121

100

0.871