Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NKJ47_RS06525 Genome accession   NZ_CP100647
Coordinates   1598474..1599862 (-) Length   462 a.a.
NCBI ID   WP_254460689.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DD13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1590642..1610303 1598474..1599862 within 0


Gene organization within MGE regions


Location: 1590642..1610303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKJ47_RS06495 - 1590642..1592474 (+) 1833 WP_254460683.1 hypothetical protein -
  NKJ47_RS06500 - 1592534..1593742 (-) 1209 WP_254460684.1 glycosyltransferase -
  NKJ47_RS06505 - 1593739..1594689 (-) 951 WP_254460685.1 YbhN family protein -
  NKJ47_RS06510 - 1594686..1595474 (-) 789 WP_254460686.1 class I SAM-dependent methyltransferase -
  NKJ47_RS06515 - 1595497..1596354 (-) 858 WP_254460687.1 glycosyltransferase family 2 protein -
  NKJ47_RS06520 pilB 1596488..1598227 (+) 1740 WP_254460688.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NKJ47_RS06525 pilR 1598474..1599862 (-) 1389 WP_254460689.1 sigma-54 dependent transcriptional regulator Regulator
  NKJ47_RS06530 - 1599945..1601558 (-) 1614 WP_254460690.1 ATP-binding protein -
  NKJ47_RS06535 sucC 1601940..1603109 (+) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  NKJ47_RS06540 sucD 1603132..1604007 (+) 876 WP_010342226.1 succinate--CoA ligase subunit alpha -
  NKJ47_RS06545 - 1604208..1605485 (-) 1278 WP_254460691.1 DUF2254 domain-containing protein -
  NKJ47_RS06550 - 1605737..1607833 (+) 2097 WP_254460692.1 pyrroloquinoline quinone-dependent dehydrogenase -
  NKJ47_RS06555 - 1608526..1610163 (+) 1638 WP_254460693.1 NAD+ synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49890.28 Da        Isoelectric Point: 6.6703

>NTDB_id=705948 NKJ47_RS06525 WP_254460689.1 1598474..1599862(-) (pilR) [Xanthomonas sacchari strain DD13]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISAADLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=705948 NKJ47_RS06525 WP_254460689.1 1598474..1599862(-) (pilR) [Xanthomonas sacchari strain DD13]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCACGACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGTGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGCGCTGCGTAGCACCATCGCCAAGGTCGCCCGC
AACCAGGCACCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGTACGATCCACGAACAGGGCGC
CCGCGCCGCCGGGCCCTTCGTGCCGGTGAACTGCGGCGCCATCCCCGCGGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTTGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCCACCGAAGTGCCGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGGATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCGGCGCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCGTCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAGGCCGCCCCGGCG
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCACTGCCGTCCTACATCGAACAACTCGAACGCGCCGCGAT
CCAGAAGGCACTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGTTGGGCATCACCTTTCGGGCGCTGCGCT
ACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.826

99.567

0.626
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47