Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NKJ47_RS06475 Genome accession   NZ_CP100647
Coordinates   1588062..1589321 (-) Length   419 a.a.
NCBI ID   WP_254460681.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DD13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583062..1594321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKJ47_RS06450 - 1583321..1583998 (+) 678 WP_010340533.1 response regulator transcription factor -
  NKJ47_RS06455 - 1583991..1585325 (+) 1335 WP_254460677.1 HAMP domain-containing sensor histidine kinase -
  NKJ47_RS06460 - 1585363..1586286 (-) 924 WP_254460678.1 transposase -
  NKJ47_RS06465 coaE 1586555..1587178 (-) 624 WP_254460679.1 dephospho-CoA kinase -
  NKJ47_RS06470 - 1587192..1588055 (-) 864 WP_254460680.1 A24 family peptidase -
  NKJ47_RS06475 pilC 1588062..1589321 (-) 1260 WP_254460681.1 type II secretion system F family protein Machinery gene
  NKJ47_RS06480 pilA/pilAI 1589687..1590079 (+) 393 WP_254460682.1 pilin Machinery gene
  NKJ47_RS06490 - 1590184..1590609 (+) 426 WP_302329810.1 pilin -
  NKJ47_RS06495 - 1590642..1592474 (+) 1833 WP_254460683.1 hypothetical protein -
  NKJ47_RS06500 - 1592534..1593742 (-) 1209 WP_254460684.1 glycosyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45735.06 Da        Isoelectric Point: 10.1183

>NTDB_id=705945 NKJ47_RS06475 WP_254460681.1 1588062..1589321(-) (pilC) [Xanthomonas sacchari strain DD13]
MSATRSAVKKEPVARNTSQQVPFVWEGTDKRGIKMKGEQIAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWM
LLLLLIGSIGGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYES
AVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=705945 NKJ47_RS06475 WP_254460681.1 1588062..1589321(-) (pilC) [Xanthomonas sacchari strain DD13]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCAATACCAGCCAACAGGTGCCCTTCGTCTGGGAGGG
CACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGATCGCCAAGAACGCCAACCTGCTGCGTGCCGAACTGCGTCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCCAAGCCCAAGCCTTTGTTCGGAGCTGCCGGCAGCAAGATCAGCCCCAAGGAC
ATTGCCTTCTTCAGTCGCCAGATGGCGACCATGATGAAATCAGGCGTCCCGATCGTGGGTTCGCTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGATGGTCGACCAGATCCGCACCGACATCGAGGGCGGCTCCTCGCTCTACGAGG
CGGTCAGCAAGCATCCGGTGCAGTTCGACGAGCTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTCGAG
ACGGTGCTGGAGACGGTTGCCACTTATAAGGAGAACATCGAGGCACTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTGATGGCGGTCGCCCTGATCGTTACCTCGATCCTGCTGGTTTGGGTCGTTCCGCAGTTCGAAGACGTGTTCA
AGGGCTTCGGCGCGGAACTGCCGGCCTTCACCCAGATGATCGTCGCGGCATCGCGTTTCATGGTGTCGTACTGGTGGATG
CTGTTGCTCTTGCTGATCGGCAGCATCGGCGGCTTCATCTTCGCCTACAAACGCTCGCCCGCAATGCAGCATGGGATGGA
CCGACTGGTGCTCAAAGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGTTTCTCGCGCACCCTGGCGG
TCACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCGCTGGACATCGTCGCCGGCGCCACCGGCAATAGCGTCTACGAATCT
GCCGTACTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCTGTCAATGTGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAATACTTCG
AGCAGGAAGTGAACAATGCGGTCGACGCCTTGAGCAGCCTGATCGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

51.961

97.375

0.506
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baumannii D1279779

51.225

97.375

0.499
  pilG Neisseria gonorrhoeae MS11

44

95.465

0.42
  pilG Neisseria meningitidis 44/76-A

43.5

95.465

0.415
  pilC Vibrio cholerae strain A1552

41.975

96.659

0.406
  pilC Vibrio campbellii strain DS40M4

40.452

94.988

0.384