Detailed information NTG0070584

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FGCSD_RS06120
• Genome accession: NZ_AP018726
• Coordinates: 1210485..1212584 (+)
• Length: 699 a.a.
• NCBI ID: WP_129555799.1
• Uniprot ID: A0AAE9ZZX6
• Organism: Streptococcus dysgalactiae strain Kdys0611
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1205485..1217584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGCSD_RS06100 (FGCSD_1154)	pbp3	1206345..1207574 (-)	1230	WP_129555798.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
FGCSD_RS06105 (FGCSD_1155)	rplL	1207813..1208178 (-)	366	WP_003043797.1	50S ribosomal protein L7/L12	-
FGCSD_RS06110 (FGCSD_1156)	rplJ	1208243..1208743 (-)	501	WP_003050354.1	50S ribosomal protein L10	-
FGCSD_RS06115 (FGCSD_1157)	-	1209053..1210075 (+)	1023	WP_129555386.1	IS30 family transposase	-
FGCSD_RS06120 (FGCSD_1158)	clpC	1210485..1212584 (+)	2100	WP_129555799.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
FGCSD_RS06125 (FGCSD_1160)	-	1212641..1213383 (-)	743	Protein_1137	hypothetical protein	-
FGCSD_RS06130 (FGCSD_1161)	-	1213557..1214579 (+)	1023	WP_172595983.1	IS30 family transposase	-
FGCSD_RS06135 (FGCSD_1162)	yihA	1214691..1215290 (-)	600	WP_129555801.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
FGCSD_RS06140 (FGCSD_1163)	clpX	1215300..1216529 (-)	1230	WP_003054192.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FGCSD_RS06145 (FGCSD_1164)	-	1216645..1216815 (-)	171	WP_003054200.1	hypothetical protein	-
FGCSD_RS06150 (FGCSD_1165)	-	1216835..1217332 (-)	498	WP_129555802.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77357.14 Da
• Isoelectric Point: 4.9699

>NTDB_id=70584 FGCSD_RS06120 WP_129555799.1 1210485..1212584(+) (clpC) [Streptococcus dysgalactiae strain Kdys0611]
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGTEQPTAQGHQTKKDGILAKLG
TNLTEEARQGKLDPVIGRNHEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDAVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAHLAA
QHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMDNHSEDQKVTATVNDIAESVERLTGVPVSNMGA
SDLERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVIPLLLQVLDDGRLTDGQGNTINFKNT
VIIATSNAGFGHQEDENTDQPAIMDRIAPYFRPEFLNRFNGVIEFNHLQKKDLEEIVDLMLAEVNQTIAKKGISLAISDD
AKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHNKN

Nucleotide

• Length: 2100 bp

>NTDB_id=70584 FGCSD_RS06120 WP_129555799.1 1210485..1212584(+) (clpC) [Streptococcus dysgalactiae strain Kdys0611]
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGTGGCTA
TCGCAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACACCTGAAGAATTCCAGGCATATCGTCAAACTGGAC
GTCTAAGCGATAAAGGTACTGAACAACCTACAGCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCTAAACTTGGC
ACCAACTTAACGGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGACACTGCGGA
AATTTTAGCTCGCCGAACAAAGAATAATCCCGTTCTAGTCGGAGATGCCGGTGTTGGTAAAACAGCTGTGGTTGAAGGGC
TAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATTATTTCCATTGATATTTCTGGCCTT
GAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTTAAAGAAGCTGGGAATAT
TATTCTTTTCTTTGATGAAATTCATCAAATTCTTGGTGCAGGTTCCACTGGTGGTGACTCTGGGTCTAAAGGATTAGCTG
ATATGCTAAAACCTGCTCTTTCCCGTGGTGAATTGACACTGATTGGCGCCACAACTCAAGATGAATACCGCAATACCATT
TTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAACGCACCGTCTGCTGAGGACACCTTCCATATTTT
AATGGGAATCCGAAATCTTTACGAACAACACCATAATGTTATCCTTCCGGATGCTGTTCTTAAAGCTGCGATTGACTATT
CTATTCAATACATTCCTCAACGTAGTTTACCAGATAAAGCGATTGACTTAGTAGATATGACTGCTGCGCATTTAGCCGCT
CAGCATCCTGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACCACTCAAAAGAATATCCAAGAAGAGGCTGTGGCTAA
GGAAGATTTTGAGAGAGCTTTAACTGCTAAAACTCGAATTGAAGAATTGCAAAAACAAATGGACAACCATAGCGAAGACC
AAAAGGTTACTGCTACTGTCAATGACATTGCAGAATCCGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAATATGGGAGCT
AGTGATTTGGAAAGACTCAAAGAAATTAGCAACCGCTTAAAAGGACACGTGATTGGCCAAGATGGAGCTGTTGAAGCTGT
GGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGATGACGGCAATCGTCCTATCGGTTCCTTCCTCTTTGTTGGACCAA
CAGGTGTCGGTAAGACAGAGTTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGAGGCTATTATTCGACTTGAC
ATGTCCGAATACAGTGATCGTACCGCTGTGTCCAAGTTAATAGGGACAACTGCCGGTTATGTCGGTTATGATGATAATAA
CAATACGTTAACGGAACGTGTTCGTCGCAACCCGTATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCGATCCGCAAG
TCATTCCCCTTCTTCTCCAAGTACTGGATGATGGCCGATTAACAGATGGTCAGGGAAATACCATCAACTTTAAAAACACT
GTTATCATTGCTACTTCTAATGCTGGATTTGGGCATCAAGAAGATGAAAATACTGATCAACCTGCTATTATGGACCGTAT
TGCGCCTTACTTTAGACCAGAATTTCTCAATCGTTTCAACGGGGTTATCGAATTCAATCATCTGCAAAAAAAAGACTTAG
AAGAAATTGTTGATTTAATGTTAGCGGAAGTTAATCAAACCATAGCTAAAAAAGGAATCAGCTTAGCTATCTCTGATGAT
GCTAAAGCTCACTTGATTGAATTAGGTTATGACCATGCAATGGGAGTTCGACCATTACGCCGTGTCATCGAGCAAGAAAT
CCGAGACCGCATTACAGACTTTTACCTCGATCACCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAAGGACAGTTAG
TCATTCACAACAAAAACTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (259-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-600)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.673	100	0.484
clpE	Streptococcus mutans UA159	46.544	100	0.472
clpE	Streptococcus pneumoniae Rx1	45.911	99.714	0.458
clpE	Streptococcus pneumoniae D39	45.911	99.714	0.458
clpE	Streptococcus pneumoniae R6	45.911	99.714	0.458
clpE	Streptococcus pneumoniae TIGR4	45.833	99.571	0.456
clpC	Bacillus subtilis subsp. subtilis str. 168	45.513	89.27	0.406
clpC	Streptococcus pneumoniae Rx1	40.943	97.139	0.398
clpC	Streptococcus pneumoniae D39	40.943	97.139	0.398
clpC	Streptococcus pneumoniae TIGR4	40.795	97.139	0.396
clpC	Streptococcus thermophilus LMG 18311	42.903	88.698	0.381
clpC	Streptococcus thermophilus LMD-9	42.903	88.698	0.381
clpC	Streptococcus mutans UA159	42.742	88.698	0.379
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.165	88.555	0.373