Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OK783_RS06610 Genome accession   NZ_CP115654
Coordinates   1257220..1257609 (-) Length   129 a.a.
NCBI ID   WP_225577445.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA1090 N-1-60     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1252220..1262609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK783_RS06575 (OK783_06575) - 1252491..1252763 (-) 273 WP_003691603.1 ACT domain-containing protein -
  OK783_RS06580 (OK783_06580) - 1252888..1253625 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  OK783_RS06585 (OK783_06585) prmB 1253763..1254662 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  OK783_RS06590 (OK783_06590) - 1254761..1254958 (-) 198 WP_229931398.1 hypothetical protein -
  OK783_RS06595 (OK783_06595) - 1254994..1255479 (+) 486 WP_225577457.1 hypothetical protein -
  OK783_RS06600 (OK783_06600) - 1255619..1256272 (+) 654 WP_010951236.1 IS1595 family transposase -
  OK783_RS06605 (OK783_06605) - 1256546..1256869 (+) 324 Protein_1274 hypothetical protein -
  OK783_RS06610 (OK783_06610) comE 1257220..1257609 (-) 390 WP_225577445.1 helix-hairpin-helix domain-containing protein Machinery gene
  OK783_RS06615 (OK783_06615) - 1257714..1257830 (-) 117 Protein_1276 competence protein ComE -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13597.35 Da        Isoelectric Point: 10.8280

>NTDB_id=705825 OK783_RS06610 WP_225577445.1 1257220..1257609(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAIAEYRA
QNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=705825 OK783_RS06610 WP_225577445.1 1257220..1257609(-) (comE) [Neisseria gonorrhoeae strain FA1090 N-1-60]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCCATTGCGGAATACCGCGCG
CAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGA
CCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1