Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NLY38_RS04890 Genome accession   NZ_CP100553
Coordinates   1069686..1071278 (-) Length   530 a.a.
NCBI ID   WP_003243065.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain KHPS2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064686..1076278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY38_RS04865 (NLY38_04865) pilV 1065390..1065950 (-) 561 WP_195880968.1 type IV pilus modification protein PilV -
  NLY38_RS04870 (NLY38_04870) - 1065959..1066447 (-) 489 WP_195880967.1 GspH/FimT family pseudopilin -
  NLY38_RS04875 (NLY38_04875) - 1066589..1067098 (-) 510 WP_011921053.1 GspH/FimT family protein -
  NLY38_RS04880 (NLY38_04880) thiO 1067178..1068281 (+) 1104 WP_195880966.1 glycine oxidase ThiO -
  NLY38_RS04885 (NLY38_04885) pilR 1068343..1069683 (-) 1341 WP_129483943.1 sigma-54 dependent transcriptional regulator Regulator
  NLY38_RS04890 (NLY38_04890) pilS 1069686..1071278 (-) 1593 WP_003243065.1 ATP-binding protein Regulator
  NLY38_RS04895 (NLY38_04895) - 1071268..1071510 (-) 243 WP_195880965.1 PP0621 family protein -
  NLY38_RS04900 (NLY38_04900) - 1071722..1072714 (-) 993 WP_003243069.1 outer membrane protein assembly factor BamD -
  NLY38_RS04905 (NLY38_04905) rluD 1073056..1074030 (+) 975 WP_011921057.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NLY38_RS04910 (NLY38_04910) pgeF 1074033..1074758 (+) 726 WP_195881364.1 peptidoglycan editing factor PgeF -
  NLY38_RS04915 (NLY38_04915) - 1074892..1075482 (+) 591 WP_230089760.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58761.90 Da        Isoelectric Point: 8.4720

>NTDB_id=705823 NLY38_RS04890 WP_003243065.1 1069686..1071278(-) (pilS) [Pseudomonas hydrolytica strain KHPS2]
MIADASTLGSTPGRRILRLYHFYRLSIGLALILLISSNLDEQLLDVVHIDLFRSGSWAYLILNIFIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAMALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSESLAEQRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELAGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGDEQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAKQHRIGQVWLRLFRDPSSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=705823 NLY38_RS04890 WP_003243065.1 1069686..1071278(-) (pilS) [Pseudomonas hydrolytica strain KHPS2]
GTGATCGCTGACGCCAGCACCCTCGGCAGCACGCCAGGCCGACGCATCCTCAGGCTCTATCACTTCTATCGCCTGAGCAT
CGGTCTGGCGCTGATCCTGCTGATCTCCAGCAATCTCGACGAGCAGTTGCTCGATGTCGTGCATATCGACCTGTTCCGCA
GCGGCAGCTGGGCCTACCTGATCCTGAACATCTTCATCGCCGTGCTGGTGCAGAAACCCAAGCATCTGATGCAGCTGTTC
AGCCTGGCGCTGGTGGATGTGATCTTTCTCTCCGCGCTGTTCTACGCGGCAGGAGGCACTCCCAGCGGCATCGGCAACCT
GCTGGTGGTGGCCGTGGCCATCGCCAACATCCTGCTGCGCGGCCGTATCGGCCTGCTGATCGCCGCCATTGCCGCGATGG
CGCTGATCTATCTGACCTTCTATCTCAGCCTCAGCCGCCCCGCCGCTGCCGCCCAATACGTTCAGGCGGGTGCGCTGGGT
GCGCTGTGCTTCGCCGGCGCACTGTTCATTCAGGGCATCACTCGCCGCCTGCAGGTCAGCGAAAGCCTCGCCGAACAGCG
CGCCGCCGATGTGGCCAATCTGGAAGAGCTCAATGCCCAGATCCTGCAGCGCATGCGTACCGGCATCCTGGTGCTGGACA
CCCAGCACCGCGTGCTACTGGCCAACCAGGGCGCCACCCAGTTGCTGGGGCGCGGCGAGCTGGCCGGCAAGATCATCGAC
CCGCACTGCCCGGAACTGGTCAAACGCCTGCAGCAGTGGCTGCACAACCCCACCCTGCGCCCCGACAGCCTGCAGGCTCA
GGTGGACGGCCCGGTGCTGCAGCCCAGCTTCATTTCCCTGCAACGCGGCGACGAGCAGCACACTCTGGTGTTTCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCTCAGCAGCTCAAGCTCGCCTCGCTCGGCCGACTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGCCACGCCGCCCAGCTGCTGCAGGAGTCGGAGGATCTGCAGGGGCCGGACCAGCG
TCTGGCGCAGATCATCCAGGATCACTCCAAACGCATGAATCTGGTGATCGAGAACGTTCTGCAACTGTCGCGCAGACGCC
AGGCCGAACCGCAGTTGCTCGACCTGAAATACTGGCTGCACCGCTTCGCCAGCGAGTTTCGCAGCTCCGCACCGGCTGAT
CGGCAGATCCATCTGGAGACCCAGGGCGGCAGCCTGCAGACACGCATGGACCCACACCAGCTGACCCAGGTGCTGACCAA
TCTGGTGCAGAACGGCCTGCGCTATAGTGCCAAGCAGCACAGGATCGGCCAGGTCTGGCTACGCCTGTTCCGGGACCCAA
GCAGCGACCTGCCGGTGCTGGAAATCCTCGACGACGGCCCAGGCGTGCCGCCCGAGCAGGAGCAGCACATCTTCGAGCCC
TTCTACACCACCGAGAACAAGGGCACGGGCCTGGGCCTGTATATTTCCCGCGAGCTGTGCCAGGGCAACCAGGCGCGTCT
CGACTACAAACCACGCGAAGGGGGCGGCAGCTGCTTCCGCATCACCTTTGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(201-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666