Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NLY38_RS04885 Genome accession   NZ_CP100553
Coordinates   1068343..1069683 (-) Length   446 a.a.
NCBI ID   WP_129483943.1    Uniprot ID   -
Organism   Pseudomonas hydrolytica strain KHPS2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1060218..1068281 1068343..1069683 flank 62


Gene organization within MGE regions


Location: 1060218..1069683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY38_RS04850 (NLY38_04850) - 1060218..1063889 (-) 3672 WP_195880970.1 pilus assembly protein -
  NLY38_RS04855 (NLY38_04855) - 1063901..1064548 (-) 648 WP_195880969.1 PilX N-terminal domain-containing pilus assembly protein -
  NLY38_RS04860 (NLY38_04860) - 1064545..1065393 (-) 849 WP_011921050.1 PilW family protein -
  NLY38_RS04865 (NLY38_04865) pilV 1065390..1065950 (-) 561 WP_195880968.1 type IV pilus modification protein PilV -
  NLY38_RS04870 (NLY38_04870) - 1065959..1066447 (-) 489 WP_195880967.1 GspH/FimT family pseudopilin -
  NLY38_RS04875 (NLY38_04875) - 1066589..1067098 (-) 510 WP_011921053.1 GspH/FimT family protein -
  NLY38_RS04880 (NLY38_04880) thiO 1067178..1068281 (+) 1104 WP_195880966.1 glycine oxidase ThiO -
  NLY38_RS04885 (NLY38_04885) pilR 1068343..1069683 (-) 1341 WP_129483943.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49574.95 Da        Isoelectric Point: 5.8600

>NTDB_id=705822 NLY38_RS04885 WP_129483943.1 1068343..1069683(-) (pilR) [Pseudomonas hydrolytica strain KHPS2]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFVTKPVDLGRLRELVATALRIRSPEGEGAPVDNRLLGDSPPMKALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLAEGSGLSAAKLQPEALEKLKNYRFPGNVRELENMLERAYTLCEDDQISPADLRLADASGPSGETGEASLALIDNLE
DYLEGIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=705822 NLY38_RS04885 WP_129483943.1 1068343..1069683(-) (pilR) [Pseudomonas hydrolytica strain KHPS2]
ATGACCCGCCAGAGAGCCTTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAAATCACCCTCGGCCGGATGAA
GCTGGACACGCGCAGCGCACGCAACGTCAAGGAAGCGCGCGAATGGCTGGCCCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTGGTGCAACACATCCAGCAGCGCCACCCGCAGGTACCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCACCAAGCCGGTGGA
TCTCGGCCGCCTGCGCGAGCTGGTCGCCACGGCCCTGCGCATCCGCTCCCCCGAGGGCGAAGGCGCTCCGGTGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGAAGGCACTGCGCAAGCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGTCTGATCCACGAGCAGGGCCCGCGCGCCGAACAGCCGTT
CGTCCCGGTCAACTGCGGCGCCATCCCATCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GGGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCTGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTACGCGCCGTCGGTGGTCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGCCGCCGAGGTGGCCGCCGGGCGCTTCCGCCAGGACCTCTATT
ACCGCCTCAACGTCATCGAACTGCGCGTGCCACCGCTGCGCGAACGCCGCGAGGACATCGCCCAACTGGCCGAGGTCATG
CTCGCCCGCCTGGCCGAGGGTAGCGGTCTGAGCGCCGCCAAGCTGCAGCCCGAAGCGCTGGAGAAACTGAAGAACTATCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGGACGACCAGATCAGCCCCG
CCGACCTACGCCTGGCCGATGCGAGCGGCCCCAGCGGCGAAACCGGCGAGGCCAGCCTGGCGCTGATCGACAATCTGGAA
GACTATCTCGAAGGCATCGAACGCAAACTGATCATGCAGGCGCTCGAAGAAACCCGCTGGAACCGCACGGCGGCGGCCCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGATTGAAGAAGCTGGGGATCGACTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

50

100

0.516