Detailed information NTG0705784

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NLZ07_RS20900
• Genome accession: NZ_CP100542
• Coordinates: 4237496..4238296 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LH09-d
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4232496..4243296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLZ07_RS20865 (NLZ07_20865)	gspH	4232652..4233161 (+)	510	WP_038806668.1	type II secretion system minor pseudopilin GspH	-
NLZ07_RS20870 (NLZ07_20870)	gspI	4233164..4233529 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NLZ07_RS20875 (NLZ07_20875)	gspJ	4233526..4234122 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
NLZ07_RS20880 (NLZ07_20880)	gspK	4234119..4235105 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
NLZ07_RS20885 (NLZ07_20885)	gspL	4235092..4236285 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
NLZ07_RS20890 (NLZ07_20890)	-	4236278..4236763 (+)	486	WP_004145896.1	type II secretion system protein M	-
NLZ07_RS20895 (NLZ07_20895)	-	4236753..4237499 (+)	747	WP_047694261.1	type II secretion system protein N	-
NLZ07_RS20900 (NLZ07_20900)	pilD	4237496..4238296 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NLZ07_RS20905 (NLZ07_20905)	hrpB	4238344..4240773 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
NLZ07_RS20910 (NLZ07_20910)	thpR	4240846..4241382 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NLZ07_RS20915 (NLZ07_20915)	sfsA	4241382..4242098 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NLZ07_RS20920 (NLZ07_20920)	dksA	4242261..4242716 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=705784 NLZ07_RS20900 WP_004145898.1 4237496..4238296(+) (pilD) [Klebsiella pneumoniae strain LH09-d]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=705784 NLZ07_RS20900 WP_004145898.1 4237496..4238296(+) (pilD) [Klebsiella pneumoniae strain LH09-d]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425