Detailed information NTG0705652

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NLZ12_RS04415
• Genome accession: NZ_CP100511
• Coordinates: 934795..935595 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LH50-a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 929795..940595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLZ12_RS04395 (NLZ12_04395)	dksA	930375..930830 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
NLZ12_RS04400 (NLZ12_04400)	sfsA	930993..931709 (-)	717	WP_004177390.1	DNA/RNA nuclease SfsA	-
NLZ12_RS04405 (NLZ12_04405)	thpR	931709..932245 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
NLZ12_RS04410 (NLZ12_04410)	hrpB	932318..934747 (+)	2430	WP_023282188.1	ATP-dependent helicase HrpB	-
NLZ12_RS04415 (NLZ12_04415)	pilD	934795..935595 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NLZ12_RS04420 (NLZ12_04420)	-	935592..936338 (-)	747	WP_021441215.1	type II secretion system protein N	-
NLZ12_RS04425 (NLZ12_04425)	-	936328..936813 (-)	486	WP_004151943.1	type II secretion system protein M	-
NLZ12_RS04430 (NLZ12_04430)	gspL	936806..937999 (-)	1194	WP_046043759.1	type II secretion system protein GspL	-
NLZ12_RS04435 (NLZ12_04435)	gspK	937986..938972 (-)	987	WP_016531794.1	type II secretion system minor pseudopilin GspK	-
NLZ12_RS04440 (NLZ12_04440)	gspJ	938969..939565 (-)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
NLZ12_RS04445 (NLZ12_04445)	gspI	939562..939927 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NLZ12_RS04450 (NLZ12_04450)	gspH	939924..940439 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=705652 NLZ12_RS04415 WP_004145898.1 934795..935595(-) (pilD) [Klebsiella pneumoniae strain LH50-a]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=705652 NLZ12_RS04415 WP_004145898.1 934795..935595(-) (pilD) [Klebsiella pneumoniae strain LH50-a]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425