Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NLZ17_RS27535 Genome accession   NZ_CP100482
Coordinates   5737673..5739193 (+) Length   506 a.a.
NCBI ID   WP_024360644.1    Uniprot ID   -
Organism   Klebsiella grimontii strain LH87-a     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5732673..5744193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLZ17_RS27515 (NLZ17_27515) - 5734239..5735168 (-) 930 WP_004097473.1 branched-chain amino acid transaminase -
  NLZ17_RS27520 (NLZ17_27520) ilvM 5735185..5735442 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  NLZ17_RS27525 (NLZ17_27525) ilvG 5735439..5737085 (-) 1647 WP_024360643.1 acetolactate synthase 2 catalytic subunit -
  NLZ17_RS27530 (NLZ17_27530) ilvL 5737225..5737323 (-) 99 WP_001375501.1 ilv operon leader peptide -
  NLZ17_RS27535 (NLZ17_27535) comM 5737673..5739193 (+) 1521 WP_024360644.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NLZ17_RS27540 (NLZ17_27540) - 5739217..5739555 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  NLZ17_RS27545 (NLZ17_27545) hdfR 5739674..5740495 (+) 822 WP_024360645.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55044.23 Da        Isoelectric Point: 7.5908

>NTDB_id=705557 NLZ17_RS27535 WP_024360644.1 5737673..5739193(+) (comM) [Klebsiella grimontii strain LH87-a]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNATRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRNPLTPPLSEGEYSDDTPVDLRDVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIHSLVDSTRATKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPQQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTHEE
ESSASVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEAVDCI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=705557 NLZ17_RS27535 WP_024360644.1 5737673..5739193(+) (comM) [Klebsiella grimontii strain LH87-a]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGCGCACCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACCATGGTAGGGCTGCCGGAAACAACGGTGAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACCATTAATCTGGCTCCGGCCGATCTGCCAAAAGAAGGTGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAATGCTACCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGTGCCATATCCAGCGCCATGGAGGCAATAAAAGCGGGTC
GGAAGATTGTTATCTCTAATGAGAATTCTCCGGAGGTAGGATTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGCAATCCCCTCACTCCTCCACTCTCAGAAGGAGAGTATTCGGATGATACACC
GGTTGACCTGCGTGATGTTATTGGCCAGCAGCAGGGGAAACGCGCGCTGGAAATTATCGCCGCAGGTGGCCACAACCTGC
TGATGATAGGCCCGCCCGGCACCGGTAAAACGATGCTCGCCAGTCGATTACCGGGACTGCTACCGCCGTTGAGTAACCAG
GAGGCGCTGGAAAGCGCGGCAATACATAGCCTGGTCGATTCCACGCGTGCGACGAAAAATTGGCGTCGCAGGCCCTTTCG
CGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGTGGCGGCTCAATTCCGGCACCAGGAGAGATCTCGCTGGCCC
ATAATGGCGTCCTGTTTCTGGATGAGCTGCCTGAATTCGAACGCAGGGTACTGGATGCGTTACGAGAACCGATTGAGTCA
GGGGTTATCCATATCTCTCGCACGCGCGCCAAAATTGATTATCCGGCCCGTTTCCAGCTTATTGCAGCGATGAACCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCCTCGCCACAACAGACGCTACGCTACCTGGGCCGTTTATCCGGCC
CGTTTCTCGACCGGTTCGATCTCTCTCTGGAGATCCCACTTCCGCCGCCTGGAGTACTCAGTCAGGGAACACACGAGGAG
GAAAGTAGCGCCAGCGTGCGTCAACGTGTTCTGGCCGCACGCGAAAGACAGCTATCACGACAGAAAAAACTTAATGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATCAAGATGACGCTATCTGGCTGGAGCAGACGCTAACTCAGC
TTGGACTTTCAATCCGCGCCTGGCAACGCCTGCTTAAAGTTTCCCGGACTATTGCGGATATTGAAGCCGTCGATTGCATC
GAACGTCATCATCTGCAGGAGGCTCTCGGCTATAGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Glaesserella parasuis strain SC1401

59.449

100

0.597
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Vibrio campbellii strain DS40M4

59.208

99.802

0.591
  comM Legionella pneumophila str. Paris

48.992

98.024

0.48
  comM Legionella pneumophila strain ERS1305867

48.992

98.024

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449