Detailed information NTG0705533

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NLZ18_RS20670
• Genome accession: NZ_CP100478
• Coordinates: 4240830..4241630 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain LH99-d
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4235830..4246630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLZ18_RS20635 (NLZ18_20635)	gspH	4235986..4236495 (+)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-
NLZ18_RS20640 (NLZ18_20640)	gspI	4236498..4236863 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NLZ18_RS20645 (NLZ18_20645)	gspJ	4236860..4237456 (+)	597	WP_099451072.1	type II secretion system minor pseudopilin GspJ	-
NLZ18_RS20650 (NLZ18_20650)	gspK	4237453..4238439 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
NLZ18_RS20655 (NLZ18_20655)	gspL	4238426..4239619 (+)	1194	WP_110226596.1	type II secretion system protein GspL	-
NLZ18_RS20660 (NLZ18_20660)	-	4239612..4240097 (+)	486	WP_004145896.1	type II secretion system protein M	-
NLZ18_RS20665 (NLZ18_20665)	-	4240087..4240833 (+)	747	WP_023316460.1	type II secretion system protein N	-
NLZ18_RS20670 (NLZ18_20670)	pilD	4240830..4241630 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NLZ18_RS20675 (NLZ18_20675)	hrpB	4241678..4244107 (-)	2430	WP_110226595.1	ATP-dependent helicase HrpB	-
NLZ18_RS20680 (NLZ18_20680)	thpR	4244180..4244716 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
NLZ18_RS20685 (NLZ18_20685)	sfsA	4244716..4245432 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NLZ18_RS20690 (NLZ18_20690)	dksA	4245595..4246050 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=705533 NLZ18_RS20670 WP_004145898.1 4240830..4241630(+) (pilD) [Klebsiella pneumoniae strain LH99-d]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=705533 NLZ18_RS20670 WP_004145898.1 4240830..4241630(+) (pilD) [Klebsiella pneumoniae strain LH99-d]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTCCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425