Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NLK52_RS06195 Genome accession   NZ_CP100436
Coordinates   1198667..1199818 (+) Length   383 a.a.
NCBI ID   WP_015483087.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1193667..1204818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS06160 (NLK52_06160) yjbB 1194342..1195559 (+) 1218 WP_080030656.1 MFS transporter -
  NLK52_RS06165 (NLK52_06165) yjbC 1195723..1196298 (+) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  NLK52_RS06170 (NLK52_06170) spx 1196479..1196874 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  NLK52_RS06175 (NLK52_06175) yjbE 1196917..1197573 (-) 657 WP_015483086.1 TerC family protein -
  NLK52_RS06180 (NLK52_06180) - 1197743..1197883 (+) 141 WP_119122854.1 hypothetical protein -
  NLK52_RS06185 (NLK52_06185) mecA 1197850..1198506 (+) 657 WP_015383354.1 adaptor protein MecA Regulator
  NLK52_RS06190 (NLK52_06190) - 1198509..1198623 (-) 115 Protein_1159 hypothetical protein -
  NLK52_RS06195 (NLK52_06195) coiA 1198667..1199818 (+) 1152 WP_015483087.1 competence protein CoiA Machinery gene
  NLK52_RS06200 (NLK52_06200) pepF 1200048..1201877 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  NLK52_RS06205 (NLK52_06205) - 1201915..1202082 (-) 168 WP_003244944.1 hypothetical protein -
  NLK52_RS06210 (NLK52_06210) spxH 1202397..1203296 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  NLK52_RS06215 (NLK52_06215) bhbI 1203293..1203691 (-) 399 WP_015383357.1 thiol management oxidoreductase component -
  NLK52_RS06220 (NLK52_06220) cwlQ 1203946..1204671 (-) 726 WP_015383358.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44816.98 Da        Isoelectric Point: 9.8770

>NTDB_id=705418 NLK52_RS06195 WP_015483087.1 1198667..1199818(+) (coiA) [Bacillus subtilis strain MEC_B298]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPNVFQKLTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGVDDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKEINRLRLLFYEKRQTPFSFLPTEVFVPVSKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPASGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=705418 NLK52_RS06195 WP_015483087.1 1198667..1199818(+) (coiA) [Bacillus subtilis strain MEC_B298]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGATATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACCATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCACCAAATGTCTTTCAGAAGCTGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTTAG
CCACATCATACCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGTAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCACAT
CGGTTTAACTCAAAGGAAATAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGTAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTTGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAAGTGGCATACACTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

97.319

97.389

0.948