Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NLK52_RS04550 Genome accession   NZ_CP100436
Coordinates   894768..895559 (+) Length   263 a.a.
NCBI ID   WP_015383146.1    Uniprot ID   -
Organism   Bacillus subtilis strain MEC_B298     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 889768..900559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS04520 (NLK52_04520) sxzA 890607..891638 (+) 1032 WP_003243057.1 iron chelate uptake ABC transporter family permease subunit -
  NLK52_RS04525 (NLK52_04525) yfhB 891753..892634 (+) 882 WP_015383143.1 PhzF family phenazine biosynthesis isomerase -
  NLK52_RS04530 (NLK52_04530) yfhC 892722..893306 (+) 585 WP_015482973.1 nitroreductase -
  NLK52_RS04535 (NLK52_04535) yfhD 893345..893536 (-) 192 WP_003233561.1 YfhD family protein -
  NLK52_RS04540 (NLK52_04540) yfhE 893603..893713 (-) 111 WP_003223230.1 YfhE family protein -
  NLK52_RS04545 (NLK52_04545) yfhF 893768..894679 (-) 912 WP_038428645.1 TIGR01777 family oxidoreductase -
  NLK52_RS04550 (NLK52_04550) recX 894768..895559 (+) 792 WP_015383146.1 recombination regulator RecX Regulator
  NLK52_RS04555 (NLK52_04555) yfhH 895568..895882 (+) 315 WP_015383147.1 YfhH family protein -
  NLK52_RS04560 (NLK52_04560) yfhI 896025..897218 (+) 1194 WP_015482975.1 MFS transporter -
  NLK52_RS04565 (NLK52_04565) sspK 897250..897402 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  NLK52_RS04570 (NLK52_04570) yfhJ 897527..897796 (+) 270 WP_003243789.1 YfhJ family protein -
  NLK52_RS04575 (NLK52_04575) yfhK 897941..898459 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  NLK52_RS04580 (NLK52_04580) spdL 898544..898876 (+) 333 WP_041517766.1 SdpC immunity protein SpdL -
  NLK52_RS04585 (NLK52_04585) ephM 898863..899723 (+) 861 WP_015383151.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30898.10 Da        Isoelectric Point: 6.6690

>NTDB_id=705405 NLK52_RS04550 WP_015383146.1 894768..895559(+) (recX) [Bacillus subtilis strain MEC_B298]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EEHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=705405 NLK52_RS04550 WP_015383146.1 894768..895559(+) (recX) [Bacillus subtilis strain MEC_B298]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGAGCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACGAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.24

100

0.992