Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PF552_RS09955 Genome accession   NZ_CP115632
Coordinates   2091991..2092626 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 2022CK-00063     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2086991..2097626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF552_RS09930 (PF552_09930) - 2087047..2088027 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  PF552_RS09935 (PF552_09935) kdsB 2088039..2088800 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PF552_RS09940 (PF552_09940) lpxK 2088810..2089820 (-) 1011 WP_031960446.1 tetraacyldisaccharide 4'-kinase -
  PF552_RS09945 (PF552_09945) msbA 2089823..2091550 (-) 1728 WP_281714807.1 lipid A export permease/ATP-binding protein MsbA -
  PF552_RS09950 (PF552_09950) - 2091547..2091975 (-) 429 WP_000669685.1 biopolymer transporter ExbD -
  PF552_RS09955 (PF552_09955) exbB 2091991..2092626 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PF552_RS09960 (PF552_09960) - 2092676..2093563 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  PF552_RS09965 (PF552_09965) - 2093560..2094342 (-) 783 WP_000057212.1 ParA family protein -
  PF552_RS09970 (PF552_09970) rsmG 2094364..2094996 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  PF552_RS09975 (PF552_09975) murU 2095084..2095773 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  PF552_RS09980 (PF552_09980) - 2095773..2096786 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=705381 PF552_RS09955 WP_000264037.1 2091991..2092626(-) (exbB) [Acinetobacter baumannii strain 2022CK-00063]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=705381 PF552_RS09955 WP_000264037.1 2091991..2092626(-) (exbB) [Acinetobacter baumannii strain 2022CK-00063]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393