Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NLY76_RS10515 Genome accession   NZ_CP100430
Coordinates   2168550..2169314 (+) Length   254 a.a.
NCBI ID   WP_012775418.1    Uniprot ID   A0A0Z9LUD5
Organism   Streptococcus suis strain LSS42     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2163550..2174314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS10470 (NLY76_10470) - 2163637..2163921 (+) 285 WP_015647601.1 hypothetical protein -
  NLY76_RS10475 (NLY76_10475) - 2163914..2164249 (+) 336 WP_044687192.1 DUF771 domain-containing protein -
  NLY76_RS10480 (NLY76_10480) - 2164306..2165427 (+) 1122 WP_044687193.1 site-specific integrase -
  NLY76_RS10500 (NLY76_10500) - 2165932..2166615 (-) 684 WP_044687194.1 YoaK family protein -
  NLY76_RS10505 (NLY76_10505) rlmH 2166640..2167119 (-) 480 WP_015647604.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NLY76_RS10510 (NLY76_10510) htrA 2167293..2168489 (+) 1197 WP_044687195.1 S1C family serine protease Regulator
  NLY76_RS10515 (NLY76_10515) spo0J 2168550..2169314 (+) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28966.25 Da        Isoelectric Point: 9.4760

>NTDB_id=705231 NLY76_RS10515 WP_012775418.1 2168550..2169314(+) (spo0J) [Streptococcus suis strain LSS42]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=705231 NLY76_RS10515 WP_012775418.1 2168550..2169314(+) (spo0J) [Streptococcus suis strain LSS42]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9LUD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547