Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NLY76_RS05305 Genome accession   NZ_CP100430
Coordinates   1097763..1098989 (-) Length   408 a.a.
NCBI ID   WP_044679730.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092763..1103989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS05275 (NLY76_05275) - 1092791..1093015 (-) 225 WP_002934981.1 hypothetical protein -
  NLY76_RS05280 (NLY76_05280) - 1093077..1094390 (-) 1314 WP_044755857.1 excalibur calcium-binding domain-containing protein -
  NLY76_RS05285 (NLY76_05285) - 1094525..1094707 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  NLY76_RS05290 (NLY76_05290) lepA 1094757..1096589 (-) 1833 WP_044769873.1 translation elongation factor 4 -
  NLY76_RS05295 (NLY76_05295) ndk 1096685..1097098 (-) 414 WP_024385693.1 nucleoside-diphosphate kinase -
  NLY76_RS05300 (NLY76_05300) yihA 1097121..1097708 (-) 588 WP_044769874.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NLY76_RS05305 (NLY76_05305) clpX 1097763..1098989 (-) 1227 WP_044679730.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NLY76_RS05310 (NLY76_05310) - 1099187..1099699 (-) 513 WP_024378658.1 dihydrofolate reductase -
  NLY76_RS05315 (NLY76_05315) - 1100042..1100881 (-) 840 WP_044675829.1 thymidylate synthase -
  NLY76_RS05320 (NLY76_05320) - 1100934..1101236 (-) 303 WP_044769876.1 hypothetical protein -
  NLY76_RS05325 (NLY76_05325) - 1101248..1101526 (-) 279 WP_044769878.1 hypothetical protein -
  NLY76_RS05330 (NLY76_05330) - 1101652..1102611 (-) 960 WP_044769879.1 ROK family glucokinase -
  NLY76_RS05335 (NLY76_05335) - 1102707..1103042 (-) 336 WP_002934966.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45348.86 Da        Isoelectric Point: 4.6382

>NTDB_id=705216 NLY76_RS05305 WP_044679730.1 1097763..1098989(-) (clpX) [Streptococcus suis strain LSS42]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPSQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=705216 NLY76_RS05305 WP_044679730.1 1097763..1098989(-) (clpX) [Streptococcus suis strain LSS42]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGGTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACTGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATTGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATCCCAGAGTTGATTGGTCGTTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAAGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.374

100

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574