Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NLY76_RS02995 Genome accession   NZ_CP100430
Coordinates   614020..614823 (+) Length   267 a.a.
NCBI ID   WP_024389909.1    Uniprot ID   A0A0Z8M8C6
Organism   Streptococcus suis strain LSS42     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 609020..619823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS02970 (NLY76_02970) - 609449..610147 (-) 699 WP_024389911.1 amino acid ABC transporter permease -
  NLY76_RS02975 (NLY76_02975) - 610162..611001 (-) 840 WP_024389910.1 transporter substrate-binding domain-containing protein -
  NLY76_RS02980 (NLY76_02980) - 611012..611773 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  NLY76_RS02985 (NLY76_02985) micA 611967..612671 (+) 705 WP_004298854.1 response regulator YycF Regulator
  NLY76_RS02990 (NLY76_02990) micB 612664..614013 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NLY76_RS02995 (NLY76_02995) vicX 614020..614823 (+) 804 WP_024389909.1 MBL fold metallo-hydrolase Regulator
  NLY76_RS03000 (NLY76_03000) vga(F) 615078..616463 (+) 1386 WP_044770119.1 ABC-F type ribosomal protection protein Vga(F) -
  NLY76_RS03005 (NLY76_03005) pbp2b 616555..618624 (+) 2070 WP_044680892.1 penicillin-binding protein PBP2B -
  NLY76_RS03010 (NLY76_03010) recR 618633..619229 (+) 597 WP_024404490.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29658.77 Da        Isoelectric Point: 5.9833

>NTDB_id=705207 NLY76_RS02995 WP_024389909.1 614020..614823(+) (vicX) [Streptococcus suis strain LSS42]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMN
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=705207 NLY76_RS02995 WP_024389909.1 614020..614823(+) (vicX) [Streptococcus suis strain LSS42]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGCAAGTATGGGATGAAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTTCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8M8C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768