Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   L4174_RS02195 Genome accession   NZ_CP100425
Coordinates   480881..481483 (-) Length   200 a.a.
NCBI ID   WP_036749519.1    Uniprot ID   A0A066RQK8
Organism   Photobacterium sp. CCB-ST2H9     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 475881..486483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS02180 (L4174_002180) - 477034..478047 (+) 1014 WP_248143949.1 Fe(3+) ABC transporter substrate-binding protein -
  L4174_RS02185 (L4174_002185) - 478199..479827 (+) 1629 WP_248143950.1 iron ABC transporter permease -
  L4174_RS02190 (L4174_002190) - 479827..480864 (+) 1038 WP_248143951.1 ABC transporter ATP-binding protein -
  L4174_RS02195 (L4174_002195) opaR 480881..481483 (-) 603 WP_036749519.1 TetR/AcrR family transcriptional regulator Regulator
  L4174_RS02200 (L4174_002200) hpt 481692..482225 (+) 534 WP_248143952.1 hypoxanthine phosphoribosyltransferase -
  L4174_RS02205 (L4174_002205) can 482292..482948 (-) 657 WP_248143953.1 carbonate dehydratase -
  L4174_RS02210 (L4174_002210) - 483107..484030 (+) 924 WP_248143954.1 ABC transporter ATP-binding protein -
  L4174_RS02215 (L4174_002215) - 484027..484797 (+) 771 WP_248143955.1 ABC transporter permease -
  L4174_RS02220 (L4174_002220) panC 484889..485767 (-) 879 WP_248143956.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22996.31 Da        Isoelectric Point: 6.0024

>NTDB_id=705110 L4174_RS02195 WP_036749519.1 480881..481483(-) (opaR) [Photobacterium sp. CCB-ST2H9]
MDTIVKKTRTRLSPEKRKQQLLKCALEVFARRGIGRAGHADIADMANVSVATVFNYFPTREALVEQVLYQVERKFNELLN
LCLGEEHDTIHGHLSCITGYLIDAVIEQQDWLKVWFEWSTSVRTETWPQFLDANQPNLKQVTNIFELGKQNGQLSTDIAS
YDLTWLLHGLCYVLYLRANIEPNKDSMQAQADAYISLMFP

Nucleotide


Download         Length: 603 bp        

>NTDB_id=705110 L4174_RS02195 WP_036749519.1 480881..481483(-) (opaR) [Photobacterium sp. CCB-ST2H9]
ATGGACACCATAGTTAAGAAAACGAGGACACGTCTCTCACCCGAGAAACGTAAACAACAACTTCTCAAGTGTGCGCTGGA
AGTATTTGCCCGCAGGGGAATTGGTCGTGCCGGCCATGCCGACATTGCTGACATGGCCAATGTTTCAGTGGCGACTGTAT
TCAATTACTTTCCAACCCGTGAAGCACTCGTTGAGCAAGTTCTTTATCAGGTTGAGCGCAAGTTCAACGAACTGTTAAAC
CTGTGTCTGGGAGAAGAACATGACACCATCCACGGTCACCTGAGCTGTATTACAGGCTATTTGATTGATGCCGTCATTGA
GCAGCAAGACTGGCTCAAAGTATGGTTCGAATGGAGTACTTCCGTCCGTACTGAAACATGGCCCCAATTCCTGGATGCAA
ACCAGCCTAACCTGAAACAGGTCACCAACATTTTTGAACTGGGTAAACAAAACGGCCAGCTGAGTACTGATATCGCATCT
TACGATCTGACCTGGTTGCTGCATGGTCTCTGTTATGTACTGTACCTGCGCGCCAACATTGAACCCAACAAAGACAGCAT
GCAGGCACAGGCCGATGCTTACATCAGCCTAATGTTCCCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066RQK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48

100

0.48
  hapR Vibrio cholerae C6706

42.857

98

0.42
  hapR Vibrio cholerae strain A1552

42.857

98

0.42