Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NIN90_RS12810 Genome accession   NZ_CP100422
Coordinates   2770069..2770686 (+) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii strain 104486766     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2765069..2775686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS12785 panC 2765513..2766394 (+) 882 WP_232658176.1 pantoate--beta-alanine ligase -
  NIN90_RS12790 - 2766468..2767238 (-) 771 WP_004729049.1 ABC transporter permease -
  NIN90_RS12795 - 2767244..2768161 (-) 918 WP_143680351.1 ABC transporter ATP-binding protein -
  NIN90_RS12800 can 2768505..2769173 (+) 669 WP_004729053.1 carbonate dehydratase -
  NIN90_RS12805 hpt 2769221..2769748 (-) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  NIN90_RS12810 opaR 2770069..2770686 (+) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  NIN90_RS12815 lpdA 2770805..2772232 (-) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  NIN90_RS12820 aceF 2772505..2774397 (-) 1893 WP_232658177.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=705078 NIN90_RS12810 WP_014204466.1 2770069..2770686(+) (opaR) [Vibrio furnissii strain 104486766]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=705078 NIN90_RS12810 WP_014204466.1 2770069..2770686(+) (opaR) [Vibrio furnissii strain 104486766]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTACTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAGCACGATGCA
GATGATCTGGCGACGCTGTTCCATGGCGTGTGCTACTCCCTGTTCGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766