Detailed information NTG0705061

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NIN90_RS02310
• Genome accession: NZ_CP100422
• Coordinates: 478830..479819 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain 104486766
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 473830..484819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIN90_RS02275	ftsB	473845..474129 (+)	285	WP_004723824.1	cell division protein FtsB	-
NIN90_RS02280	ispD	474126..474839 (+)	714	WP_158108060.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NIN90_RS02285	ispF	474889..475365 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NIN90_RS02290	truD	475397..476443 (+)	1047	WP_158108061.1	tRNA pseudouridine(13) synthase TruD	-
NIN90_RS02295	surE	476436..477203 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
NIN90_RS02300	-	477196..477822 (+)	627	WP_254413585.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NIN90_RS02305	nlpD	477822..478757 (+)	936	WP_014205778.1	murein hydrolase activator NlpD	-
NIN90_RS02310	rpoS	478830..479819 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
NIN90_RS02315	mutS	479888..482449 (-)	2562	WP_254413586.1	DNA mismatch repair protein MutS	-
NIN90_RS02320	pncC	482534..483028 (+)	495	WP_055465883.1	nicotinamide-nucleotide amidase	-
NIN90_RS02325	recA	483195..484247 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
NIN90_RS02330	recX	484342..484812 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=705061 NIN90_RS02310 WP_004723838.1 478830..479819(+) (rpoS) [Vibrio furnissii strain 104486766]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=705061 NIN90_RS02310 WP_004723838.1 478830..479819(+) (rpoS) [Vibrio furnissii strain 104486766]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGATCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCTCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTAAGAGAAATCCTGATGAAACAGGGGTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894