Detailed information NTG0704906

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NJR02_RS02320
• Genome accession: NZ_CP100392
• Coordinates: 487051..487926 (-)
• Length: 291 a.a.
• NCBI ID: WP_104452201.1
• Uniprot ID: A0AA42VEE5
• Organism: Aeromonas caviae strain FAHZZU2447
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 482051..492926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NJR02_RS02295 (NJR02_02295)	-	483798..484982 (+)	1185	WP_104452199.1	tetratricopeptide repeat protein	-
NJR02_RS02300 (NJR02_02300)	mutT	484991..485395 (+)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
NJR02_RS02305 (NJR02_02305)	yacG	485453..485647 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
NJR02_RS02310 (NJR02_02310)	zapD	485658..486380 (-)	723	WP_010675825.1	cell division protein ZapD	-
NJR02_RS02315 (NJR02_02315)	coaE	486418..487032 (-)	615	WP_104452200.1	dephospho-CoA kinase	-
NJR02_RS02320 (NJR02_02320)	pilD	487051..487926 (-)	876	WP_104452201.1	A24 family peptidase	Machinery gene
NJR02_RS02325 (NJR02_02325)	pilC	488004..489245 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
NJR02_RS02330 (NJR02_02330)	pilB	489373..491079 (-)	1707	WP_104452202.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NJR02_RS02335 (NJR02_02335)	-	491083..491523 (-)	441	WP_104452203.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NJR02_RS02340 (NJR02_02340)	nadC	491834..492697 (-)	864	WP_041211785.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32182.31 Da
• Isoelectric Point: 6.8280

>NTDB_id=704906 NJR02_RS02320 WP_104452201.1 487051..487926(-) (pilD) [Aeromonas caviae strain FAHZZU2447]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERTWHAEYSDYFGNDEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=704906 NJR02_RS02320 WP_104452201.1 487051..487926(-) (pilD) [Aeromonas caviae strain FAHZZU2447]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCGGACCTGGCATGCCGAATACAGCGACTATTTCG
GTAACGATGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGTTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCACTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTAGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTAACCGGCAAAGAGGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCAGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAATCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTTGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.282	0.601
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.688	95.876	0.505
pilD	Acinetobacter nosocomialis M2	52.688	95.876	0.505
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464