Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PDI73_RS10255 Genome accession   NZ_CP115479
Coordinates   2101158..2101943 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096158..2106943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS10230 (PDI73_10230) - 2096758..2097927 (+) 1170 WP_017863957.1 ring-cleaving dioxygenase -
  PDI73_RS10235 (PDI73_10235) - 2097938..2098528 (+) 591 WP_003132255.1 flavin reductase family protein -
  PDI73_RS10240 (PDI73_10240) rpmG 2098608..2098757 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  PDI73_RS10245 (PDI73_10245) rpmF 2098787..2098960 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  PDI73_RS10250 (PDI73_10250) - 2099324..2101105 (+) 1782 WP_109990575.1 heavy metal translocating P-type ATPase -
  PDI73_RS10255 (PDI73_10255) spo0J 2101158..2101943 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  PDI73_RS10260 (PDI73_10260) rarA 2101998..2103257 (-) 1260 WP_033900268.1 replication-associated recombination protein A Machinery gene
  PDI73_RS10265 (PDI73_10265) - 2103301..2103789 (-) 489 WP_033900267.1 GNAT family N-acetyltransferase -
  PDI73_RS10270 (PDI73_10270) - 2103941..2104408 (+) 468 WP_010905112.1 DUF3013 family protein -
  PDI73_RS10275 (PDI73_10275) - 2104438..2105991 (+) 1554 WP_058205583.1 ABC-F family ATP-binding cassette domain-containing protein -
  PDI73_RS10280 (PDI73_10280) - 2106122..2106406 (+) 285 WP_010905114.1 hypothetical protein -
  PDI73_RS10285 (PDI73_10285) - 2106444..2106932 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=704840 PDI73_RS10255 WP_021722894.1 2101158..2101943(-) (spo0J) [Lactococcus lactis strain EP2]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=704840 PDI73_RS10255 WP_021722894.1 2101158..2101943(-) (spo0J) [Lactococcus lactis strain EP2]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTTAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATCAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471