Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   PDI73_RS10260 Genome accession   NZ_CP115479
Coordinates   2101998..2103257 (-) Length   419 a.a.
NCBI ID   WP_033900268.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096998..2108257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS10235 (PDI73_10235) - 2097938..2098528 (+) 591 WP_003132255.1 flavin reductase family protein -
  PDI73_RS10240 (PDI73_10240) rpmG 2098608..2098757 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  PDI73_RS10245 (PDI73_10245) rpmF 2098787..2098960 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  PDI73_RS10250 (PDI73_10250) - 2099324..2101105 (+) 1782 WP_109990575.1 heavy metal translocating P-type ATPase -
  PDI73_RS10255 (PDI73_10255) spo0J 2101158..2101943 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  PDI73_RS10260 (PDI73_10260) rarA 2101998..2103257 (-) 1260 WP_033900268.1 replication-associated recombination protein A Machinery gene
  PDI73_RS10265 (PDI73_10265) - 2103301..2103789 (-) 489 WP_033900267.1 GNAT family N-acetyltransferase -
  PDI73_RS10270 (PDI73_10270) - 2103941..2104408 (+) 468 WP_010905112.1 DUF3013 family protein -
  PDI73_RS10275 (PDI73_10275) - 2104438..2105991 (+) 1554 WP_058205583.1 ABC-F family ATP-binding cassette domain-containing protein -
  PDI73_RS10280 (PDI73_10280) - 2106122..2106406 (+) 285 WP_010905114.1 hypothetical protein -
  PDI73_RS10285 (PDI73_10285) - 2106444..2106932 (+) 489 WP_010905115.1 YdeI/OmpD-associated family protein -
  PDI73_RS10290 (PDI73_10290) prmA 2106950..2107903 (+) 954 WP_012896947.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46795.12 Da        Isoelectric Point: 5.7600

>NTDB_id=704841 PDI73_RS10260 WP_033900268.1 2101998..2103257(-) (rarA) [Lactococcus lactis strain EP2]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKEGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=704841 PDI73_RS10260 WP_033900268.1 2101998..2103257(-) (rarA) [Lactococcus lactis strain EP2]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGAGGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTCCC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-246)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.242

100

0.597