Detailed information NTG0704820

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NKI27_RS16285
• Genome accession: NZ_CP100390
• Coordinates: 3608194..3609555 (+)
• Length: 453 a.a.
• NCBI ID: WP_265047086.1
• Uniprot ID: -
• Organism: Alkalimarinus alittae strain A2M4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3603194..3614555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKI27_RS16270 (NKI27_16240)	-	3603885..3604709 (+)	825	WP_265047083.1	outer membrane protein assembly factor BamD	-
NKI27_RS16275 (NKI27_16245)	-	3604756..3606384 (-)	1629	WP_265047084.1	NAD+ synthase	-
NKI27_RS16280 (NKI27_16250)	-	3606526..3608181 (+)	1656	WP_265047085.1	PAS domain-containing sensor histidine kinase	-
NKI27_RS16285 (NKI27_16255)	pilR	3608194..3609555 (+)	1362	WP_265047086.1	sigma-54 dependent transcriptional regulator	Regulator
NKI27_RS16290 (NKI27_16260)	thiO	3609565..3610671 (-)	1107	WP_265047087.1	glycine oxidase ThiO	-
NKI27_RS16295 (NKI27_16265)	-	3610815..3611372 (+)	558	WP_265047088.1	GspH/FimT family pseudopilin	-
NKI27_RS16300 (NKI27_16270)	-	3611374..3611793 (-)	420	WP_320109433.1	type IV pilin protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50647.00 Da
• Isoelectric Point: 4.7583

>NTDB_id=704820 NKI27_RS16285 WP_265047086.1 3608194..3609555(+) (pilR) [Alkalimarinus alittae strain A2M4]
MTIKTALIVDDEPDIRELLEITLMRMGIDTCSAENITKAKALLETQEFNLCLTDMNLPDGNGIDLVCHIQQYFPQIPVAV
ITAYGSVETAITSLKSGAFDFVSKPVDLARLRELVSSALKLTEEKKVSKEAVETGNLLLGESPEMERLRKQIRKLARSQA
PVYISGESGSGKELVARMMHLQGPRSEAPFVPVNCGAIPSELMESEFFGHKKGSFSGAVENKEGLFQAANGGTLFLDEVA
DLPIGMQVKLLRAIQEKAVRPVGEQKEVSVDVRILSATHKNLAELVETGEFRQDLYYRINVIELDVPKLRERKSDIPLLA
NHILQRIAEECDIFDAKISDDAMSSLKEYHFPGNVRELENIIERAFTLCENDVIETSDLQLRPASKPDGAMEFSENSVQR
SEDTSLEDFLEGIERKTIEQALEETRWNKTAAAKKLGITFRALRYRLKKLDME

Nucleotide

• Length: 1362 bp

>NTDB_id=704820 NKI27_RS16285 WP_265047086.1 3608194..3609555(+) (pilR) [Alkalimarinus alittae strain A2M4]
ATGACCATTAAAACAGCCCTTATTGTTGATGACGAACCGGACATTAGAGAATTGTTAGAGATTACTCTAATGAGAATGGG
AATAGATACTTGTAGCGCAGAGAATATAACCAAGGCGAAGGCATTGTTAGAGACTCAAGAGTTTAACCTCTGCCTTACAG
ATATGAACCTACCTGATGGCAACGGCATTGATCTGGTTTGTCATATACAGCAGTACTTCCCTCAAATTCCGGTAGCTGTC
ATTACCGCTTACGGCAGCGTAGAAACAGCCATTACTTCACTAAAATCTGGGGCATTTGATTTTGTATCAAAACCAGTCGA
CCTAGCCAGACTACGTGAACTTGTCAGTTCAGCACTTAAACTAACCGAAGAGAAAAAAGTAAGTAAAGAAGCTGTAGAAA
CAGGAAACCTTTTGCTAGGCGAATCACCAGAAATGGAGCGCCTACGAAAGCAAATTCGCAAACTAGCACGCAGCCAAGCA
CCGGTTTATATCAGCGGGGAATCAGGCAGCGGAAAAGAACTCGTTGCACGAATGATGCACCTTCAGGGACCTCGATCAGA
AGCACCGTTTGTACCGGTAAACTGCGGAGCCATTCCAAGCGAGCTAATGGAGAGTGAGTTTTTCGGTCACAAAAAAGGCA
GTTTTAGTGGGGCAGTAGAGAACAAAGAAGGGCTATTTCAGGCTGCCAATGGTGGAACCTTGTTTCTAGATGAGGTCGCC
GACCTTCCCATAGGTATGCAAGTCAAGTTACTCAGAGCCATACAAGAAAAAGCCGTGCGCCCAGTTGGGGAGCAAAAAGA
AGTCTCTGTGGATGTTCGCATTCTTAGCGCCACTCACAAAAACTTGGCAGAACTGGTTGAAACTGGAGAGTTTCGACAAG
ACCTTTACTACCGAATCAATGTCATCGAGTTGGATGTGCCTAAGCTTCGAGAGCGTAAGAGCGATATCCCCTTGCTTGCA
AACCACATATTGCAGCGCATAGCCGAAGAGTGTGATATCTTTGATGCCAAAATAAGTGATGACGCCATGAGTAGCCTTAA
AGAGTATCACTTTCCTGGCAATGTGCGAGAACTCGAAAACATTATCGAGCGCGCCTTTACACTGTGCGAGAATGATGTAA
TCGAAACCAGCGATCTACAACTAAGACCTGCCAGCAAGCCTGATGGCGCGATGGAGTTTTCAGAGAATTCAGTACAGCGA
AGTGAAGACACCTCCTTAGAAGATTTCTTAGAAGGCATAGAAAGAAAAACCATAGAACAAGCGCTCGAAGAGACTCGTTG
GAACAAAACCGCTGCGGCCAAAAAGCTGGGTATTACATTTAGAGCGCTGCGGTATCGTTTGAAGAAGTTAGATATGGAGT
AG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.55	100	0.676
pilR	Acinetobacter baumannii strain A118	50.218	100	0.508