Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EL388_RS09915 Genome accession   NZ_AP018721
Coordinates   1942892..1944295 (-) Length   467 a.a.
NCBI ID   WP_126463054.1    Uniprot ID   A0A4R3JT79
Organism   Sulfuritortus calidifontis strain J1A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937892..1949295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL388_RS09880 - 1938445..1939026 (-) 582 WP_126463041.1 LON peptidase substrate-binding domain-containing protein -
  EL388_RS09885 - 1939026..1939646 (-) 621 WP_126463043.1 flavin prenyltransferase UbiX -
  EL388_RS09890 - 1939643..1940185 (-) 543 WP_126463045.1 Gx transporter family protein -
  EL388_RS09895 - 1940166..1940552 (-) 387 WP_232019113.1 NusG domain II-containing protein -
  EL388_RS09900 rapZ 1940606..1941439 (-) 834 WP_126463049.1 RNase adapter RapZ -
  EL388_RS09905 hprK 1941440..1942390 (-) 951 WP_126463050.1 HPr(Ser) kinase/phosphatase -
  EL388_RS09910 ptsN 1942378..1942833 (-) 456 WP_126463052.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EL388_RS09915 rpoN/rpoN1 1942892..1944295 (-) 1404 WP_126463054.1 RNA polymerase factor sigma-54 Machinery gene
  EL388_RS09920 lptB 1944335..1945057 (-) 723 WP_126463057.1 LPS export ABC transporter ATP-binding protein -
  EL388_RS09925 lptA 1945054..1945620 (-) 567 WP_126463059.1 lipopolysaccharide transport periplasmic protein LptA -
  EL388_RS09930 lptC 1945604..1946179 (-) 576 WP_126463061.1 LPS export ABC transporter periplasmic protein LptC -
  EL388_RS09935 - 1946176..1946706 (-) 531 WP_126463063.1 KdsC family phosphatase -
  EL388_RS09940 - 1946703..1947689 (-) 987 WP_126463065.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52033.21 Da        Isoelectric Point: 4.6934

>NTDB_id=70482 EL388_RS09915 WP_126463054.1 1942892..1944295(-) (rpoN/rpoN1) [Sulfuritortus calidifontis strain J1A]
MKQSLQLRLNQQLTLTPQLQQSIRLLQLSTLELQQEISQALQDNPMLERADVSEGEGGDYETTEPAPESGGLESEEVYAE
LAWGDRSVAGPGSGEDDDELGFQQPDASQAGLRQHLLDQLSLTPVAERDRRLVALLIDALDEDGYLTVSLEELAEMLPED
AEYDLVELEAALKLLQSFDPVGVGARDLAECLCLQLATLPPETPWLAEARRLAREGLKMLAEHEYGKLKKWLGIALDADF
QAVRALITGLNPRPGARYAEVSAQYVVPDVLVRKLRGQWQASLNPAAMPKLRINEMYAGILRQNRAGGSLQTQLQEARWL
IKNVQQRFETILRVAQAIVERQRLFFEHGPTAMRPLVLREIAEQLDLHESTVSRVTSQKYMLTPRGLFEFKYFFCSSLGT
EEGGATSSTAIKALIKQAIEAENRGQPLSDSAISTMLGKQGYVVARRTVAKYREQMQIPPANQRKSI

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=70482 EL388_RS09915 WP_126463054.1 1942892..1944295(-) (rpoN/rpoN1) [Sulfuritortus calidifontis strain J1A]
GTGAAGCAAAGCCTTCAACTCCGACTCAACCAGCAGCTTACGCTGACGCCGCAATTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCGACGCTGGAATTGCAACAGGAAATCAGCCAGGCTTTGCAGGACAACCCCATGCTGGAGCGGGCCGATGTCAGCG
AGGGGGAGGGCGGTGATTACGAGACCACGGAGCCTGCGCCGGAGTCGGGTGGTCTGGAGTCGGAAGAGGTCTATGCCGAA
TTGGCCTGGGGCGACCGCAGCGTGGCTGGGCCCGGCAGCGGCGAGGACGACGACGAACTCGGTTTTCAGCAGCCCGATGC
CAGCCAGGCCGGCCTGCGCCAGCACCTACTCGACCAGCTCTCGCTCACGCCCGTCGCCGAGCGCGACCGCCGGCTGGTCG
CCCTGCTGATCGATGCCCTCGACGAGGACGGCTACCTCACCGTCAGCCTGGAAGAACTGGCCGAGATGCTGCCCGAGGAC
GCGGAATATGACCTGGTCGAACTCGAAGCGGCGCTGAAACTGCTGCAAAGCTTCGATCCGGTCGGGGTCGGCGCCCGCGA
CCTGGCCGAATGCCTGTGCCTGCAACTGGCCACCCTGCCGCCGGAGACCCCCTGGCTGGCCGAGGCCAGGCGCTTGGCGC
GCGAAGGCCTGAAGATGCTGGCCGAACACGAATACGGCAAGCTGAAGAAATGGCTGGGCATTGCCCTCGATGCCGACTTC
CAGGCGGTGCGGGCGTTGATCACTGGCCTGAACCCGCGGCCGGGCGCCCGCTACGCCGAGGTCAGCGCGCAATACGTGGT
GCCCGACGTGCTGGTGCGCAAGCTGCGCGGCCAGTGGCAGGCCAGCCTCAATCCGGCCGCCATGCCCAAGCTGCGCATCA
ACGAGATGTACGCCGGCATTCTGCGCCAGAACCGCGCCGGCGGCAGCCTGCAGACCCAGCTGCAGGAGGCGCGCTGGCTG
ATCAAGAACGTGCAGCAGCGGTTCGAGACCATCCTGCGCGTGGCCCAGGCCATCGTCGAGCGCCAGCGCCTGTTCTTCGA
GCATGGGCCGACCGCCATGCGGCCCCTGGTGCTGCGCGAGATCGCCGAGCAGCTCGACCTGCACGAATCGACGGTCTCGC
GGGTGACCAGCCAGAAATACATGCTCACCCCGCGTGGCCTGTTCGAATTCAAGTATTTCTTCTGCAGCTCGCTGGGCACG
GAAGAGGGCGGCGCCACCTCCAGCACGGCGATCAAGGCCTTGATCAAACAGGCGATCGAGGCGGAGAATCGCGGCCAGCC
GCTGTCCGACAGTGCCATATCGACTATGCTGGGTAAGCAGGGTTATGTTGTCGCCCGCCGCACCGTTGCCAAATATCGCG
AACAGATGCAAATTCCGCCGGCCAACCAGCGCAAGTCGATATGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(310-465)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R3JT79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.093

100

0.55

Multiple sequence alignment