Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PDI73_RS08220 Genome accession   NZ_CP115479
Coordinates   1713670..1714746 (+) Length   358 a.a.
NCBI ID   WP_010906242.1    Uniprot ID   Q9CE70
Organism   Lactococcus lactis strain EP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1708670..1719746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS08195 (PDI73_08195) pgsA 1708778..1709350 (-) 573 WP_012898490.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PDI73_RS08200 (PDI73_08200) - 1709391..1710287 (-) 897 WP_033900820.1 RodZ family helix-turn-helix domain-containing protein -
  PDI73_RS08205 (PDI73_08205) - 1710551..1711834 (-) 1284 WP_017865078.1 pitrilysin family protein -
  PDI73_RS08210 (PDI73_08210) - 1711824..1713110 (-) 1287 WP_270328798.1 pitrilysin family protein -
  PDI73_RS08215 (PDI73_08215) yaaA 1713308..1713670 (+) 363 WP_277730134.1 S4 domain-containing protein YaaA -
  PDI73_RS08220 (PDI73_08220) recF 1713670..1714746 (+) 1077 WP_010906242.1 DNA replication/repair protein RecF Machinery gene
  PDI73_RS08225 (PDI73_08225) - 1714833..1715202 (-) 370 Protein_1601 carboxymuconolactone decarboxylase family protein -
  PDI73_RS08230 (PDI73_08230) - 1715280..1715657 (+) 378 WP_109991317.1 MerR family transcriptional regulator -
  PDI73_RS08235 (PDI73_08235) - 1715671..1716606 (-) 936 WP_259771969.1 alpha/beta hydrolase -
  PDI73_RS08240 (PDI73_08240) - 1716973..1717173 (-) 201 WP_277730135.1 hypothetical protein -
  PDI73_RS08245 (PDI73_08245) - 1717351..1717761 (+) 411 WP_277730136.1 hypothetical protein -
  PDI73_RS08250 (PDI73_08250) - 1717860..1718687 (+) 828 WP_277730137.1 hypothetical protein -
  PDI73_RS08255 (PDI73_08255) - 1718690..1718902 (+) 213 WP_277730138.1 hypothetical protein -
  PDI73_RS08260 (PDI73_08260) - 1718899..1719117 (+) 219 WP_277730139.1 hypothetical protein -
  PDI73_RS08265 (PDI73_08265) - 1719110..1719304 (+) 195 WP_277730140.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 41356.23 Da        Isoelectric Point: 6.8652

>NTDB_id=704812 PDI73_RS08220 WP_010906242.1 1713670..1714746(+) (recF) [Lactococcus lactis strain EP2]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=704812 PDI73_RS08220 WP_010906242.1 1713670..1714746(+) (recF) [Lactococcus lactis strain EP2]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGACCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

55

100

0.553
  recF Bacillus subtilis subsp. subtilis str. 168

45.977

97.207

0.447