Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   PDI73_RS03720 Genome accession   NZ_CP115479
Coordinates   777968..779203 (+) Length   411 a.a.
NCBI ID   WP_033899503.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 772968..784203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS03695 (PDI73_03695) - 773803..774396 (+) 594 WP_003132093.1 xanthine phosphoribosyltransferase -
  PDI73_RS03700 (PDI73_03700) - 774445..775749 (+) 1305 WP_033899494.1 nucleobase:cation symporter-2 family protein -
  PDI73_RS03705 (PDI73_03705) - 775777..776064 (-) 288 WP_233610933.1 hypothetical protein -
  PDI73_RS03710 (PDI73_03710) - 776310..776819 (-) 510 WP_033899498.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  PDI73_RS03715 (PDI73_03715) - 777218..777724 (+) 507 WP_029343872.1 dihydrofolate reductase -
  PDI73_RS03720 (PDI73_03720) clpX 777968..779203 (+) 1236 WP_033899503.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  PDI73_RS03725 (PDI73_03725) yihA 779200..779787 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PDI73_RS03730 (PDI73_03730) folB 779841..780191 (+) 351 WP_033899506.1 dihydroneopterin aldolase -
  PDI73_RS03735 (PDI73_03735) folE 780271..781320 (+) 1050 WP_033899509.1 GTP cyclohydrolase I FolE -
  PDI73_RS03740 (PDI73_03740) folP 781317..782390 (+) 1074 WP_033899512.1 dihydropteroate synthase -
  PDI73_RS03745 (PDI73_03745) - 782393..782890 (+) 498 WP_021721819.1 NUDIX domain-containing protein -
  PDI73_RS03750 (PDI73_03750) - 782909..784192 (+) 1284 WP_277730416.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46037.89 Da        Isoelectric Point: 4.6053

>NTDB_id=704781 PDI73_RS03720 WP_033899503.1 777968..779203(+) (clpX) [Lactococcus lactis strain EP2]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLNEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=704781 PDI73_RS03720 WP_033899503.1 777968..779203(+) (clpX) [Lactococcus lactis strain EP2]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAGTACGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAACATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ACGTTCCATTTGCGATTGCAGATGCGACAAGTTTGACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACACCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAACGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTCTGGAACGTCTGAACGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAGGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACCAAAGTTATTATTAATGAAGCAGTTGTTGATGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.559

97.567

0.747
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.137

95.864

0.567