Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EL388_RS06490 Genome accession   NZ_AP018721
Coordinates   1235626..1236414 (-) Length   262 a.a.
NCBI ID   WP_126461322.1    Uniprot ID   -
Organism   Sulfuritortus calidifontis strain J1A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230626..1241414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL388_RS14210 amrA 1231086..1231649 (-) 564 WP_126461310.1 AmmeMemoRadiSam system protein A -
  EL388_RS14215 amrB 1231639..1232439 (-) 801 WP_126461313.1 AmmeMemoRadiSam system protein B -
  EL388_RS06480 ispD 1232512..1233201 (+) 690 WP_126461316.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EL388_RS06485 - 1233359..1235533 (-) 2175 WP_126461319.1 RelA/SpoT family protein -
  EL388_RS06490 comL 1235626..1236414 (-) 789 WP_126461322.1 outer membrane protein assembly factor BamD Machinery gene
  EL388_RS06495 rluD 1236460..1237374 (+) 915 WP_126461325.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL388_RS06500 pgeF 1237361..1238113 (+) 753 WP_126461328.1 peptidoglycan editing factor PgeF -
  EL388_RS06505 - 1238282..1239097 (+) 816 WP_126461331.1 ZIP family metal transporter -
  EL388_RS06510 rimO 1239302..1240621 (+) 1320 WP_126461334.1 30S ribosomal protein S12 methylthiotransferase RimO -
  EL388_RS06515 - 1240618..1241076 (+) 459 WP_126461337.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29873.90 Da        Isoelectric Point: 6.5004

>NTDB_id=70475 EL388_RS06490 WP_126461322.1 1235626..1236414(-) (comL) [Sulfuritortus calidifontis strain J1A]
MNRILAALLLTLLAGCSLLPEQIDETKGWSASKLYNVAKEELAEDNFTKAIELFEKLEARYPYGPYAQQAQLEVAYAYYK
DNEPVSAIAACDRFIKLHPNHPHVDYAYYLKGLANFIEDSSLFASVGKQDMSERDPRAARESFEAFKELVQRFPESKYAA
DATARMKYLVNALASHEVHVSRYYYQRGAYVAAASRAKAVLETYPNAPALEEALYLMAKSYEAMNLNDLRDDALRVLKHN
FPNSPYLGGKPVNQEKAWWKFW

Nucleotide


Download         Length: 789 bp        

>NTDB_id=70475 EL388_RS06490 WP_126461322.1 1235626..1236414(-) (comL) [Sulfuritortus calidifontis strain J1A]
ATGAACCGGATTTTAGCCGCATTACTGCTTACCCTCCTCGCCGGTTGCAGCCTGCTGCCGGAGCAGATCGACGAAACCAA
GGGCTGGTCCGCCTCCAAGCTGTACAACGTCGCCAAGGAGGAGTTGGCCGAGGACAACTTCACCAAGGCGATCGAGCTGT
TCGAGAAGCTCGAGGCGCGCTATCCCTACGGCCCCTATGCCCAGCAGGCCCAGCTCGAAGTGGCCTACGCCTATTACAAG
GACAACGAGCCGGTTTCCGCCATCGCCGCCTGCGACCGCTTCATCAAGCTGCACCCGAACCATCCGCACGTCGATTACGC
CTATTACCTCAAGGGCCTGGCCAACTTCATCGAGGACAGCAGCCTGTTCGCCAGCGTGGGCAAGCAGGACATGAGCGAGC
GCGACCCGCGCGCCGCCCGCGAGTCGTTCGAGGCCTTCAAGGAACTGGTGCAGCGCTTCCCCGAGAGCAAATATGCGGCC
GACGCCACCGCTCGCATGAAGTACCTGGTCAACGCCCTGGCCTCGCACGAGGTGCACGTCTCCCGCTACTACTATCAGCG
CGGCGCCTATGTCGCGGCGGCCAGCCGGGCCAAGGCCGTGCTGGAGACCTATCCCAACGCCCCGGCCCTGGAAGAGGCGC
TCTACCTCATGGCCAAGAGCTACGAGGCGATGAACCTCAACGACCTGCGCGACGACGCCCTGCGCGTGCTCAAGCACAAT
TTCCCCAACAGCCCCTATCTTGGCGGCAAGCCCGTCAACCAAGAAAAGGCATGGTGGAAGTTCTGGTAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.744

100

0.485
  comL Neisseria gonorrhoeae MS11

47.368

100

0.481

Multiple sequence alignment