Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NHM04_RS12485 Genome accession   NZ_CP100350
Coordinates   2858205..2858600 (+) Length   131 a.a.
NCBI ID   WP_020210990.1    Uniprot ID   A0A9J7A5I2
Organism   Gilvimarinus sp. DA14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2853205..2863600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS12460 (NHM04_12460) hemW 2853718..2854881 (-) 1164 WP_254264114.1 radical SAM family heme chaperone HemW -
  NHM04_RS12465 (NHM04_12465) ruvX 2854939..2855352 (-) 414 WP_254264115.1 Holliday junction resolvase RuvX -
  NHM04_RS12470 (NHM04_12470) - 2855352..2855942 (-) 591 WP_254264116.1 YqgE/AlgH family protein -
  NHM04_RS12475 (NHM04_12475) - 2855984..2856913 (-) 930 WP_254264117.1 energy transducer TonB -
  NHM04_RS12480 (NHM04_12480) gshB 2856910..2857875 (-) 966 WP_254264118.1 glutathione synthase -
  NHM04_RS12485 (NHM04_12485) pilG 2858205..2858600 (+) 396 WP_020210990.1 twitching motility response regulator PilG Regulator
  NHM04_RS12490 (NHM04_12490) pilH 2858665..2859027 (+) 363 WP_254264119.1 twitching motility response regulator PilH -
  NHM04_RS12495 (NHM04_12495) - 2859086..2859628 (+) 543 WP_254264120.1 chemotaxis protein CheW -
  NHM04_RS12500 (NHM04_12500) - 2859751..2861949 (+) 2199 WP_305881944.1 methyl-accepting chemotaxis protein -
  NHM04_RS12505 (NHM04_12505) - 2861978..2862841 (+) 864 WP_254264121.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14371.72 Da        Isoelectric Point: 7.8209

>NTDB_id=704704 NHM04_RS12485 WP_020210990.1 2858205..2858600(+) (pilG) [Gilvimarinus sp. DA14]
MDVSLESLKIMVIDDSKTIRRTAETLLKKAGCTVITATDGFDALAKIADSRPDIIFVDIMMPRLDGYQTCALIKNNTEFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKSELLGAIEEHVKQAKAS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=704704 NHM04_RS12485 WP_020210990.1 2858205..2858600(+) (pilG) [Gilvimarinus sp. DA14]
ATGGACGTTAGCTTGGAAAGTCTCAAAATCATGGTGATCGACGACAGTAAAACCATTCGTCGTACCGCCGAAACGCTGCT
AAAAAAAGCAGGTTGCACTGTCATTACCGCTACCGACGGGTTTGATGCTCTGGCAAAAATTGCTGATTCGCGTCCCGACA
TCATATTTGTGGATATTATGATGCCCCGCCTGGACGGCTATCAGACCTGTGCACTGATTAAGAATAATACCGAGTTTAAA
TCCACGCCGGTCATTATGCTGTCCAGCAAAGACGGCTTGTTTGATAAGGCCAAGGGCAGAATTGTCGGTTCCGATCAGTA
CCTGACTAAGCCATTCAGCAAAAGTGAGCTGTTAGGGGCCATCGAAGAGCATGTAAAACAGGCTAAAGCCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

95.42

0.71
  vicR Streptococcus mutans UA159

41.322

92.366

0.382