Detailed information NTG0704696

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NHM04_RS08160
• Genome accession: NZ_CP100350
• Coordinates: 1858739..1860118 (+)
• Length: 459 a.a.
• NCBI ID: WP_254266485.1
• Uniprot ID: A0A9J7AGM9
• Organism: Gilvimarinus sp. DA14
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1853739..1865118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHM04_RS08145 (NHM04_08145)	-	1854113..1855264 (-)	1152	WP_254266613.1	IS4 family transposase	-
NHM04_RS08150 (NHM04_08150)	-	1855389..1857017 (-)	1629	WP_254266483.1	NAD+ synthase	-
NHM04_RS08155 (NHM04_08155)	-	1857132..1858742 (+)	1611	WP_254266484.1	PAS domain-containing sensor histidine kinase	-
NHM04_RS08160 (NHM04_08160)	pilR	1858739..1860118 (+)	1380	WP_254266485.1	sigma-54 dependent transcriptional regulator	Regulator
NHM04_RS08165 (NHM04_08165)	-	1860165..1860560 (-)	396	WP_305881966.1	type IV pilin protein	-
NHM04_RS08175 (NHM04_08175)	-	1860575..1864846 (-)	4272	WP_254266486.1	pilus assembly protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50702.94 Da
• Isoelectric Point: 5.6461

>NTDB_id=704696 NHM04_RS08160 WP_254266485.1 1858739..1860118(+) (pilR) [Gilvimarinus sp. DA14]
MSDAITALVIDDEPDIRELLEITLGRMQIETFSVDTISGAKKLLQEREFSICLTDMKLPDGNGLEIVEHIQQHQPRLPVA
VITAHGNIDVAIDSMKAGAFDFISKPVDLGTLRKLVNSAIQTTQITTEPRDAGPAITGESPVMQKLNNSIRKLARSQAPV
YISGESGAGKELAARSIHHLSPRANNPFIAVNCGAIPRELLESELFGHVKGSFTGAHQDKPGLFKAAEGGTLFFDEVADL
PLDMQVKLLRAIQEKSVRPVGATGEVKTDVRILCATHKNLEDEVSHGRFRQDLFYRLNVIQLNVPALRHRQEDIPPLASQ
LLQKIAQAADMPAPKLSAGAIKTLLNYPFPGNVRELENILERAFTLCDEDIIDAEDLHLPESAPKPVSANVSGGSGALDY
YQRCLEHNSLDEYLEEIEREILCNTLESCRWNKTQTAKKLGITFRSLRYRLQKLGLDKE

Nucleotide

• Length: 1380 bp

>NTDB_id=704696 NHM04_RS08160 WP_254266485.1 1858739..1860118(+) (pilR) [Gilvimarinus sp. DA14]
ATGAGCGACGCCATAACCGCCCTTGTCATTGATGATGAACCGGATATCCGCGAGCTGCTGGAAATTACCCTGGGGCGCAT
GCAAATTGAAACTTTTAGCGTAGATACCATTAGTGGTGCCAAAAAGCTGCTACAGGAAAGAGAATTTTCCATTTGCCTAA
CGGACATGAAACTGCCTGATGGCAACGGCCTGGAAATTGTCGAGCATATTCAACAGCATCAACCGCGCCTGCCGGTTGCG
GTCATTACCGCCCACGGCAATATCGATGTCGCCATCGATTCAATGAAAGCGGGGGCATTTGACTTTATCTCGAAACCGGT
TGATTTAGGCACCTTGCGTAAGCTGGTCAATAGCGCGATACAAACCACACAAATCACCACAGAGCCGAGAGACGCCGGGC
CGGCTATTACCGGCGAATCTCCGGTGATGCAAAAGCTTAATAACAGCATTCGCAAGCTCGCTCGTTCACAGGCGCCGGTT
TATATCAGTGGCGAATCCGGTGCGGGTAAAGAGTTAGCCGCGCGCTCTATTCATCATTTGAGCCCCAGAGCCAACAACCC
TTTCATCGCCGTTAACTGTGGCGCAATTCCGCGCGAGCTTTTAGAGAGTGAATTATTCGGCCATGTAAAAGGCAGCTTTA
CCGGCGCCCACCAGGACAAACCAGGTTTATTTAAAGCTGCCGAGGGCGGTACGCTGTTTTTTGATGAGGTGGCCGACCTG
CCCTTAGATATGCAGGTAAAATTACTACGCGCGATTCAGGAAAAATCCGTACGCCCAGTCGGCGCTACCGGCGAAGTAAA
AACCGATGTACGGATATTGTGCGCTACCCATAAAAACCTGGAGGACGAAGTCTCCCACGGCCGCTTCCGCCAAGACCTGT
TCTATCGCCTCAATGTTATTCAACTAAATGTACCGGCGCTGCGCCATCGTCAGGAGGATATCCCACCTCTGGCCAGTCAA
CTGCTGCAAAAAATTGCTCAGGCGGCGGACATGCCCGCGCCAAAACTGTCGGCCGGAGCCATCAAAACTCTGCTTAACTA
TCCATTTCCCGGCAATGTGCGCGAGCTGGAAAACATTCTCGAACGCGCTTTTACCCTGTGCGACGAAGATATTATCGACG
CGGAAGATTTACACTTACCCGAGTCAGCCCCTAAACCCGTAAGCGCTAACGTCTCTGGCGGCAGCGGCGCGCTGGATTAT
TATCAGCGCTGCCTGGAGCACAATTCTCTGGATGAATATCTGGAAGAAATCGAGCGGGAGATTTTGTGTAATACGCTTGA
ATCCTGCCGCTGGAATAAAACCCAAACGGCGAAAAAGCTGGGTATTACTTTCCGTTCGCTGCGTTACCGGTTGCAAAAAC
TGGGGCTGGATAAAGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.72	98.693	0.58
pilR	Acinetobacter baumannii strain A118	49.247	100	0.499