Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VCA1004_RS09565 Genome accession   NZ_AP018689
Coordinates   2103584..2104192 (+) Length   202 a.a.
NCBI ID   WP_086981557.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098584..2109192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS09540 panC 2099022..2099894 (+) 873 WP_086981552.1 pantoate--beta-alanine ligase -
  VCA1004_RS09545 - 2100128..2100898 (-) 771 WP_086981553.1 ABC transporter permease -
  VCA1004_RS09550 - 2100898..2101839 (-) 942 WP_086981554.1 ABC transporter ATP-binding protein -
  VCA1004_RS09555 can 2101934..2102593 (+) 660 WP_086981555.1 carbonate dehydratase -
  VCA1004_RS09560 hpt 2102784..2103314 (-) 531 WP_086981556.1 hypoxanthine phosphoribosyltransferase -
  VCA1004_RS09565 opaR 2103584..2104192 (+) 609 WP_086981557.1 TetR/AcrR family transcriptional regulator Regulator
  VCA1004_RS09570 lpdA 2104406..2105833 (-) 1428 WP_086981558.1 dihydrolipoyl dehydrogenase -
  VCA1004_RS09575 aceF 2106130..2108025 (-) 1896 WP_086981559.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23611.98 Da        Isoelectric Point: 7.3347

>NTDB_id=70407 VCA1004_RS09565 WP_086981557.1 2103584..2104192(+) (opaR) [Vibrio aphrogenes strain CA-1004]
MDMIIHRPRTRLSPEKRKQQLLEIGIDVFARRGIGRGGHADIAEIAHVSVATVFNYFPTREGLVEAILNEVEQHFTTFLE
RNIDLTLPVKHNLQTLSQQLIETVLNETQWIKIWFEWSTSTREDVWPLFVATHTKHQHNFRTLFANAIVQGELNDRHHPS
NIAKLFHGICYSIFVQANRRPDRDYLNHLASSFIEMLCIYKD

Nucleotide


Download         Length: 609 bp        

>NTDB_id=70407 VCA1004_RS09565 WP_086981557.1 2103584..2104192(+) (opaR) [Vibrio aphrogenes strain CA-1004]
ATGGATATGATAATACACCGCCCAAGGACTCGATTAAGCCCGGAAAAAAGAAAGCAACAATTACTCGAGATAGGCATTGA
TGTCTTCGCACGACGTGGTATCGGCCGTGGAGGGCATGCGGATATAGCAGAAATCGCTCATGTTTCTGTCGCCACTGTTT
TTAATTATTTTCCCACTCGTGAAGGCTTAGTAGAAGCCATTCTCAATGAAGTCGAGCAACACTTTACCACCTTCTTAGAG
AGGAATATTGACCTTACTCTTCCCGTCAAGCACAACTTACAAACCCTCTCTCAACAATTGATCGAGACGGTATTAAATGA
AACACAATGGATAAAAATTTGGTTTGAATGGAGTACTTCTACTCGAGAGGACGTATGGCCATTATTTGTTGCCACTCACA
CTAAGCATCAGCACAACTTCCGAACGCTGTTTGCCAATGCAATTGTTCAAGGTGAATTAAATGATCGCCACCATCCGAGT
AACATTGCCAAGTTATTTCATGGCATTTGTTATTCTATTTTTGTTCAGGCCAACCGTCGCCCAGATAGAGATTACTTAAA
CCACTTAGCCAGCAGCTTCATCGAGATGTTATGTATTTATAAAGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

58

99.01

0.574
  hapR Vibrio cholerae C6706

57.286

98.515

0.564
  hapR Vibrio cholerae strain A1552

57.286

98.515

0.564

Multiple sequence alignment