Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PCS82_RS16730 Genome accession   NZ_CP115376
Coordinates   3463531..3464940 (-) Length   469 a.a.
NCBI ID   WP_022646353.1    Uniprot ID   -
Organism   Escherichia coli strain CUVET20-PYO4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458531..3469940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS82_RS16705 (PCS82_16670) yihA 3459795..3460427 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PCS82_RS16710 (PCS82_16675) - 3460724..3460890 (+) 167 Protein_3271 hypothetical protein -
  PCS82_RS16715 (PCS82_16680) yihI 3461009..3461518 (+) 510 WP_309204645.1 Der GTPase-activating protein YihI -
  PCS82_RS16720 (PCS82_16685) hemN 3461707..3463080 (+) 1374 WP_001590951.1 oxygen-independent coproporphyrinogen III oxidase -
  PCS82_RS16725 (PCS82_16690) yshB 3463309..3463419 (-) 111 WP_000893994.1 YshB family small membrane protein -
  PCS82_RS16730 (PCS82_16695) luxO 3463531..3464940 (-) 1410 WP_022646353.1 nitrogen regulation protein NR(I) Regulator
  PCS82_RS16735 (PCS82_16700) glnL 3464952..3466001 (-) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  PCS82_RS16740 (PCS82_16705) glnA 3466175..3467584 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  PCS82_RS16745 (PCS82_16710) typA 3467957..3469780 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52261.73 Da        Isoelectric Point: 6.4081

>NTDB_id=704037 PCS82_RS16730 WP_022646353.1 3463531..3464940(-) (luxO) [Escherichia coli strain CUVET20-PYO4]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LAHHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=704037 PCS82_RS16730 WP_022646353.1 3463531..3464940(-) (luxO) [Escherichia coli strain CUVET20-PYO4]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGACTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGCGGCACGTTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCACCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGTGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACACCATTTTTTACAAGTTGCTGCTCGCGAGCTGGGCGTAGAAGCAAAGTTGCTGCATCCGGAAACTGAAGCCGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACCGTACCGGAAAGCACTTCACAAATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGATCGGGCGCTACGTTCCGGTCATCAAAACTTGCTGTCTGAAGCGCAACC
AGAGTTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGAATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39