Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCS82_RS09450 Genome accession   NZ_CP115376
Coordinates   1958065..1958802 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CUVET20-PYO4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953065..1963802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS82_RS09435 (PCS82_09415) clpC 1953519..1956092 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PCS82_RS09440 (PCS82_09420) yfiH 1956222..1956953 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  PCS82_RS09445 (PCS82_09425) rluD 1956950..1957930 (-) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCS82_RS09450 (PCS82_09430) comL 1958065..1958802 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PCS82_RS09455 (PCS82_09435) - 1958906..1960252 (+) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  PCS82_RS09460 (PCS82_09440) raiA 1960513..1960854 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCS82_RS09465 (PCS82_09445) pheL 1960958..1961005 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PCS82_RS09470 (PCS82_09450) pheA 1961104..1962264 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCS82_RS09475 (PCS82_09455) tyrA 1962307..1963428 (-) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=704002 PCS82_RS09450 WP_000197686.1 1958065..1958802(+) (comL) [Escherichia coli strain CUVET20-PYO4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=704002 PCS82_RS09450 WP_000197686.1 1958065..1958802(+) (comL) [Escherichia coli strain CUVET20-PYO4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376