Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NKT35_RS19130 Genome accession   NZ_CP100128
Coordinates   4071803..4072597 (-) Length   264 a.a.
NCBI ID   WP_254296007.1    Uniprot ID   -
Organism   Chromobacterium sp. IIBBL 290-4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4066803..4077597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT35_RS19105 (NKT35_19105) - 4067532..4068140 (-) 609 WP_254295998.1 metal-dependent hydrolase -
  NKT35_RS19110 (NKT35_19110) - 4068205..4068975 (-) 771 WP_254296000.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NKT35_RS19115 (NKT35_19115) - 4069046..4069753 (+) 708 WP_254296002.1 glutathione S-transferase N-terminal domain-containing protein -
  NKT35_RS19120 (NKT35_19120) - 4069877..4070899 (-) 1023 WP_254296004.1 hypothetical protein -
  NKT35_RS19125 (NKT35_19125) - 4070886..4071614 (-) 729 WP_254296005.1 pseudouridine synthase -
  NKT35_RS19130 (NKT35_19130) comL 4071803..4072597 (-) 795 WP_254296007.1 outer membrane protein assembly factor BamD Machinery gene
  NKT35_RS19135 (NKT35_19135) rluD 4072596..4073693 (+) 1098 WP_254296009.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NKT35_RS19140 (NKT35_19140) pgeF 4073653..4074420 (+) 768 WP_371926383.1 peptidoglycan editing factor PgeF -
  NKT35_RS19145 (NKT35_19145) - 4074546..4075151 (+) 606 WP_254296012.1 AraC family transcriptional regulator -
  NKT35_RS19150 (NKT35_19150) - 4075148..4075990 (+) 843 WP_254296014.1 GNAT family N-acetyltransferase -
  NKT35_RS19155 (NKT35_19155) - 4076060..4076713 (+) 654 WP_254296016.1 HD domain-containing protein -
  NKT35_RS19160 (NKT35_19160) - 4076730..4077452 (+) 723 WP_254296018.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30260.43 Da        Isoelectric Point: 7.9769

>NTDB_id=703722 NKT35_RS19130 WP_254296007.1 4071803..4072597(-) (comL) [Chromobacterium sp. IIBBL 290-4]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELASGNYTRAVKLYETLESRFPYGRYAQQAQMDLAYTHY
KDGEPELAIAAADRFIKLHPTHPNLDYIYYLKGLVYFNDDSGLLAKWAGQDMSERDPKAAREAFSAFRELTTRFPKSTYT
PDASAKMSKLVDALGGNEMHVSRYYMKRGAYLAAANRAQGVVKDFSNTKYQEEALAIMVTAYDKLQMPQLRDDARRVLAL
NYPQSPYLAKPWSVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=703722 NKT35_RS19130 WP_254296007.1 4071803..4072597(-) (comL) [Chromobacterium sp. IIBBL 290-4]
ATGAAAAGATACGTTGTTGCAGCAATGTTGGTGATGGTGGGGCTTGCCGGATGTGCAACCACGGAAACCTACGACGAGAC
GCGCGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGATGAGTTGGCTAGCGGCAATTATACCCGCGCAGTCAAGC
TATACGAAACGTTGGAATCGCGTTTTCCGTATGGCCGCTATGCCCAGCAGGCTCAGATGGACCTGGCTTACACCCATTAC
AAGGATGGGGAGCCGGAACTGGCCATCGCCGCGGCGGACCGTTTCATCAAGCTGCACCCAACCCATCCTAACCTGGACTA
CATTTATTATCTGAAGGGATTGGTGTATTTCAATGACGATTCCGGCCTGCTCGCAAAATGGGCCGGCCAGGACATGAGCG
AGCGTGACCCCAAGGCCGCGCGCGAAGCCTTCTCCGCCTTCCGCGAGCTGACCACCCGCTTCCCCAAGAGCACATATACG
CCTGACGCTTCGGCCAAGATGAGCAAACTGGTGGATGCGCTGGGCGGCAACGAAATGCACGTTTCGCGCTACTACATGAA
GCGCGGCGCCTACTTGGCGGCGGCGAATCGCGCCCAGGGCGTGGTCAAGGATTTCTCCAACACCAAGTACCAGGAGGAAG
CGCTGGCCATCATGGTGACGGCTTATGACAAGTTGCAGATGCCGCAGCTGCGCGACGACGCCCGCCGCGTGCTGGCGCTT
AACTACCCGCAGAGCCCGTATCTGGCCAAGCCGTGGTCGGTTGAGGAGATGCCGTGGTGGAAGCTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

59.176

100

0.598
  comL Neisseria gonorrhoeae MS11

58.052

100

0.587