Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCS94_RS05650 Genome accession   NZ_CP115351
Coordinates   1156259..1156996 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CUVET21-37     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151259..1161996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS94_RS05620 (PCS94_05615) yfiL 1151417..1151782 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  PCS94_RS05625 (PCS94_05620) aroF 1151992..1153062 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PCS94_RS05630 (PCS94_05625) tyrA 1153073..1154194 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PCS94_RS05635 (PCS94_05630) pheA 1154237..1155397 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCS94_RS05640 (PCS94_05635) pheL 1155496..1155543 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PCS94_RS05645 (PCS94_05640) raiA 1155647..1155988 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCS94_RS05650 (PCS94_05645) comL 1156259..1156996 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PCS94_RS05655 (PCS94_05650) rluD 1157131..1158111 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCS94_RS05660 (PCS94_05655) yfiH 1158108..1158839 (+) 732 WP_029402462.1 purine nucleoside phosphorylase YfiH -
  PCS94_RS05665 (PCS94_05660) clpC 1158969..1161542 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=703604 PCS94_RS05650 WP_000197686.1 1156259..1156996(-) (comL) [Escherichia coli strain CUVET21-37]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=703604 PCS94_RS05650 WP_000197686.1 1156259..1156996(-) (comL) [Escherichia coli strain CUVET21-37]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376