Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCS86_RS17775 Genome accession   NZ_CP115343
Coordinates   3624578..3625315 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CUVET21-H2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3619578..3630315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCS86_RS17760 (PCS86_17705) clpC 3620032..3622605 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  PCS86_RS17765 (PCS86_17710) yfiH 3622735..3623466 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  PCS86_RS17770 (PCS86_17715) rluD 3623463..3624443 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCS86_RS17775 (PCS86_17720) comL 3624578..3625315 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PCS86_RS17780 (PCS86_17725) raiA 3625585..3625926 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCS86_RS17785 (PCS86_17730) pheL 3626030..3626077 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PCS86_RS17790 (PCS86_17735) pheA 3626176..3627336 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCS86_RS17795 (PCS86_17740) tyrA 3627379..3628500 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PCS86_RS17800 (PCS86_17745) aroF 3628511..3629581 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PCS86_RS17805 (PCS86_17750) yfiL 3629791..3630156 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=703541 PCS86_RS17775 WP_000197686.1 3624578..3625315(+) (comL) [Escherichia coli strain CUVET21-H2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=703541 PCS86_RS17775 WP_000197686.1 3624578..3625315(+) (comL) [Escherichia coli strain CUVET21-H2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376