Detailed information NTG0703537

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NIL17_RS24440
• Genome accession: NZ_CP100087
• Coordinates: 5032413..5033213 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain HSKP8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5027413..5038213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NIL17_RS24405 (NIL17_24395)	gspH	5027569..5028084 (+)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-
NIL17_RS24410 (NIL17_24400)	gspI	5028081..5028446 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NIL17_RS24415 (NIL17_24405)	gspJ	5028443..5029039 (+)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
NIL17_RS24420 (NIL17_24410)	gspK	5029036..5030022 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
NIL17_RS24425 (NIL17_24415)	gspL	5030009..5031202 (+)	1194	WP_004194919.1	type II secretion system protein GspL	-
NIL17_RS24430 (NIL17_24420)	-	5031195..5031680 (+)	486	WP_004145896.1	type II secretion system protein M	-
NIL17_RS24435 (NIL17_24425)	-	5031670..5032416 (+)	747	WP_004178605.1	type II secretion system protein N	-
NIL17_RS24440 (NIL17_24430)	pilD	5032413..5033213 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
NIL17_RS24445 (NIL17_24435)	hrpB	5033261..5035690 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
NIL17_RS24450 (NIL17_24440)	thpR	5035763..5036299 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NIL17_RS24455 (NIL17_24445)	sfsA	5036299..5037015 (+)	717	WP_020324420.1	DNA/RNA nuclease SfsA	-
NIL17_RS24460 (NIL17_24450)	dksA	5037178..5037633 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=703537 NIL17_RS24440 WP_004145898.1 5032413..5033213(+) (pilD) [Klebsiella pneumoniae strain HSKP8]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=703537 NIL17_RS24440 WP_004145898.1 5032413..5033213(+) (pilD) [Klebsiella pneumoniae strain HSKP8]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCATGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425