Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NHG71_RS04010 Genome accession   NZ_CP100040
Coordinates   743972..744307 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain B1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 738972..749307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHG71_RS03960 (NHG71_03940) comGC 739162..739470 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NHG71_RS03965 (NHG71_03945) comGD 739460..739897 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  NHG71_RS03970 (NHG71_03950) comGE 739881..740195 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  NHG71_RS03975 (NHG71_03955) comGF 740140..740604 (+) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  NHG71_RS03980 (NHG71_03960) comGG 740605..740982 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  NHG71_RS03985 (NHG71_03965) - 741039..741218 (+) 180 WP_022552966.1 YqzE family protein -
  NHG71_RS03990 (NHG71_03970) - 741259..741588 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  NHG71_RS03995 (NHG71_03975) tapA 741847..742518 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  NHG71_RS04000 (NHG71_03980) sipW 742490..743074 (+) 585 WP_032874025.1 signal peptidase I SipW -
  NHG71_RS04005 (NHG71_03985) tasA 743139..743924 (+) 786 WP_032874027.1 biofilm matrix protein TasA -
  NHG71_RS04010 (NHG71_03990) sinR 743972..744307 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NHG71_RS04015 (NHG71_03995) sinI 744341..744514 (-) 174 WP_032874029.1 anti-repressor SinI Regulator
  NHG71_RS04020 (NHG71_04000) - 744691..745485 (-) 795 WP_007612541.1 YqhG family protein -
  NHG71_RS04025 (NHG71_04005) - 745507..747177 (-) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  NHG71_RS04030 (NHG71_04010) gcvT 747600..748700 (+) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=703316 NHG71_RS04010 WP_003153104.1 743972..744307(-) (sinR) [Bacillus velezensis strain B1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=703316 NHG71_RS04010 WP_003153104.1 743972..744307(-) (sinR) [Bacillus velezensis strain B1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991