Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NHN23_RS06335 Genome accession   NZ_CP099990
Coordinates   1299002..1299433 (+) Length   143 a.a.
NCBI ID   WP_233640457.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294002..1304433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS06305 yqeK 1294252..1294836 (+) 585 WP_002507457.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NHN23_RS06310 rsfS 1294837..1295190 (+) 354 WP_002507458.1 ribosome silencing factor -
  NHN23_RS06315 - 1295193..1295909 (+) 717 WP_064782880.1 class I SAM-dependent methyltransferase -
  NHN23_RS06320 - 1295960..1296673 (+) 714 WP_253345708.1 helix-hairpin-helix domain-containing protein -
  NHN23_RS06325 - 1296758..1297219 (+) 462 WP_253345709.1 ComE operon protein 2 -
  NHN23_RS06330 - 1297467..1298936 (+) 1470 WP_253345710.1 ComEC/Rec2 family competence protein -
  NHN23_RS06335 comEC 1299002..1299433 (+) 432 WP_233640457.1 MBL fold metallo-hydrolase Machinery gene
  NHN23_RS06340 holA 1299506..1300480 (+) 975 WP_002507463.1 DNA polymerase III subunit delta -
  NHN23_RS06345 rpsT 1300639..1300890 (-) 252 WP_002507464.1 30S ribosomal protein S20 -
  NHN23_RS06350 lepA 1301212..1303035 (+) 1824 WP_021339276.1 translation elongation factor 4 -
  NHN23_RS06355 hemW 1303134..1304258 (+) 1125 WP_253345711.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16019.34 Da        Isoelectric Point: 8.0414

>NTDB_id=703280 NHN23_RS06335 WP_233640457.1 1299002..1299433(+) (comEC) [Staphylococcus equorum strain PU1]
MQSFSLNKAKIKLLDATITTSNDLNEQSIITLIEYDKFKILLMGDASKNNEQLLLNKYHLENIDILKVGHHGSKTSSSAS
FIDTLQPKISLISVGRNNRYKLPNKEIVECLKSINSQVLQTSENGEISITLNPNFELSANLKQ

Nucleotide


Download         Length: 432 bp        

>NTDB_id=703280 NHN23_RS06335 WP_233640457.1 1299002..1299433(+) (comEC) [Staphylococcus equorum strain PU1]
ATGCAAAGTTTTTCACTTAACAAAGCGAAAATTAAATTATTAGATGCCACAATTACAACATCGAATGATCTAAATGAACA
ATCAATTATTACATTAATTGAATATGATAAATTCAAGATTTTACTTATGGGTGATGCTTCAAAAAATAACGAACAGTTAT
TGTTAAATAAGTATCACCTTGAAAATATTGATATTTTAAAAGTAGGACACCATGGTAGTAAAACAAGTTCTAGCGCATCT
TTTATAGATACACTTCAGCCGAAAATAAGTCTGATTTCTGTTGGTCGAAATAATAGATATAAATTACCCAACAAAGAAAT
AGTAGAATGCTTAAAAAGCATTAATTCTCAAGTTCTACAAACAAGTGAAAATGGAGAAATTTCTATTACATTAAATCCTA
ATTTTGAACTTAGTGCTAATCTGAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

54.286

97.902

0.531
  comEC Staphylococcus aureus MW2

54.286

97.902

0.531