Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NHN23_RS04875 Genome accession   NZ_CP099990
Coordinates   1022667..1023296 (+) Length   209 a.a.
NCBI ID   WP_002507206.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017667..1028296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS04845 - 1017691..1018410 (+) 720 WP_002507200.1 glutamine amidotransferase -
  NHN23_RS04850 - 1018509..1019495 (-) 987 WP_021339816.1 aromatic acid exporter family protein -
  NHN23_RS04855 map 1019676..1020428 (+) 753 WP_002507202.1 type I methionyl aminopeptidase -
  NHN23_RS04860 - 1020533..1020919 (+) 387 WP_002507203.1 hypothetical protein -
  NHN23_RS04865 liaF 1020936..1021637 (+) 702 WP_253345687.1 cell wall-active antibiotics response protein LiaF -
  NHN23_RS04870 vraS 1021634..1022677 (+) 1044 WP_002511392.1 sensor histidine kinase Regulator
  NHN23_RS04875 vraR 1022667..1023296 (+) 630 WP_002507206.1 response regulator transcription factor Regulator
  NHN23_RS04880 - 1023492..1024658 (-) 1167 WP_002511391.1 YihY/virulence factor BrkB family protein -
  NHN23_RS04885 - 1024889..1025173 (-) 285 WP_002507208.1 hypothetical protein -
  NHN23_RS04890 - 1025180..1025644 (-) 465 WP_002507209.1 low molecular weight protein-tyrosine-phosphatase -
  NHN23_RS04895 - 1025779..1025982 (+) 204 WP_002507210.1 DUF1128 family protein -
  NHN23_RS04900 - 1025998..1027236 (+) 1239 WP_064782814.1 aminopeptidase -
  NHN23_RS04905 - 1027331..1027852 (+) 522 WP_002511389.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.25 Da        Isoelectric Point: 4.7666

>NTDB_id=703271 NHN23_RS04875 WP_002507206.1 1022667..1023296(+) (vraR) [Staphylococcus equorum strain PU1]
MTIKVLFVDDHEMVRIGISSYLSTQPDIDIVGEGQSGKDAIEKAHQLNPDLILMDLLMDDMDGVDATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYKNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=703271 NHN23_RS04875 WP_002507206.1 1022667..1023296(+) (vraR) [Staphylococcus equorum strain PU1]
ATGACGATTAAAGTTTTGTTTGTTGATGATCATGAAATGGTTCGAATTGGAATTTCTAGTTACTTATCTACACAGCCAGA
TATTGATATTGTAGGGGAAGGTCAGTCAGGAAAAGATGCGATTGAAAAGGCTCATCAACTAAATCCAGATTTAATCTTAA
TGGACTTGCTTATGGACGATATGGATGGTGTCGATGCTACCGAGCAAATTAAAAAAGACTTACCCCATATTAAAGTTGTA
ATGTTAACAAGTTACATTGAAGATAATGAAGTATATCGTGCTTTAGATTCTGGCGTAGACAGCTATATTTTGAAAACGAC
TAGTGCTAGTGATATAGCCGAGGCTATTCGTAAAACGTATAAAAATGAGTCTGTATTTGAAGCTGAAGTGCTTGTGAAGA
TGAGAAATAGAATGAAACAACGTGCCGAATTATATGAAATGTTAACGGAACGAGAAATGGAAATTCTATTACTTATCGCA
AAAGGTTACTCAAACCAAGAAATTGCGAGTGCATCACACATAACGATTAAAACAGTAAAAACACATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAGCATAATTTAATACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885