Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHN23_RS04280 Genome accession   NZ_CP099990
Coordinates   904987..905406 (+) Length   139 a.a.
NCBI ID   WP_021339937.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 899987..910406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS04250 atpD 900024..901436 (+) 1413 WP_021339775.1 F0F1 ATP synthase subunit beta -
  NHN23_RS04255 - 901456..901860 (+) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  NHN23_RS04260 - 902184..902417 (+) 234 WP_002507083.1 DUF1146 family protein -
  NHN23_RS04265 murA 902524..903789 (+) 1266 WP_253345674.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NHN23_RS04270 fabZ 903847..904287 (+) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NHN23_RS04275 - 904356..904796 (-) 441 WP_002507086.1 YwpF-like family protein -
  NHN23_RS04280 ssb 904987..905406 (+) 420 WP_021339937.1 single-stranded DNA-binding protein Machinery gene
  NHN23_RS04285 - 905890..906570 (+) 681 WP_002507088.1 transglycosylase family protein -
  NHN23_RS04290 tenA 906960..907649 (+) 690 WP_021339938.1 thiaminase II -
  NHN23_RS04295 thiD 907642..908463 (+) 822 WP_021339939.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NHN23_RS04300 thiM 908456..909247 (+) 792 WP_253345726.1 hydroxyethylthiazole kinase -
  NHN23_RS04305 thiE 909247..909885 (+) 639 WP_021339941.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=703268 NHN23_RS04280 WP_021339937.1 904987..905406(+) (ssb) [Staphylococcus equorum strain PU1]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=703268 NHN23_RS04280 WP_021339937.1 904987..905406(+) (ssb) [Staphylococcus equorum strain PU1]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597